Browse Element(s) Details


Os.11828.1.S2_at

Description gb:AK120805.1
DB_XREF= gi:37990428
TID=Os.11828.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013H12, full insert sequence.
FL= gb:AK120805.1 gb:AK105702.1 gb:AK119953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2683010/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11828.1.S2_at--607--10831Chr09:16300717..16300741 (25 bp)
TTGTGTCATTTCATACCTGTGGGCG
LOC_Os09g26830
Os.11828.1.S2_at--1105--8871NONE
TGAGGTTTACCTATGATGCAAGCGA
NONE
Os.11828.1.S2_at--1040--1991Chr09:16300267..16300291 (25 bp)
ACTAATAAGGCCAGGTCCCATTGCT
LOC_Os09g26830
Os.11828.1.S2_at--43--7251Chr09:16300253..16300277 (25 bp)
GTCCCATTGCTTCCAAGAACGGGTG
LOC_Os09g26830
Os.11828.1.S2_at--1141--5451Chr09:16300237..16300261 (25 bp)
GAACGGGTGGAGTTTATCTTCTTCA
LOC_Os09g26830
Os.11828.1.S2_at--851--10411Chr09:16300224..16300248 (25 bp)
TTATCTTCTTCACCAGACACCAAAG
LOC_Os09g26830
Os.11828.1.S2_at--169--9751Chr09:16300059..16300083 (25 bp)
TAATTCTAGTTGTCGGGATACGCCA
LOC_Os09g26830
Os.11828.1.S2_at--29--6931Chr09:16299988..16300012 (25 bp)
GTAGTTTTTCACACGGTGCGCCACG
LOC_Os09g26830
Os.11828.1.S2_at--804--7291Chr09:16299973..16299997 (25 bp)
GTGCGCCACGTTATAGGCATCACTG
LOC_Os09g26830
Os.11828.1.S2_at--166--8171Chr09:16299925..16299949 (25 bp)
GGAACAATTTATCTATGCCATCCAG
LOC_Os09g26830
Os.11828.1.S2_at--442--5471Chr09:16299842..16299866 (25 bp)
GAACTCCAAGATTGTCATGTACGGT
LOC_Os09g26830
Target Sequence 
TTGTGTCATTTCATACCTGTGGGCGCCGTCACAGAACTCAATGAGGTTTACCTATGATGCAAGCGAAAACTTTGATCGAG
AGGACAGTCTGTCACTAATAAGGCCAGGTCCCATTGCTTCCAAGAACGGGTGGAGTTTATCTTCTTCACCAGACACCAAA
GCAACAAAGAACGTTACAGTTACATCTTTTGATGGAGATGACGAAGAAAACAAAAGGGAGTAGAAGGGGCACTGTGCATT
TCATGAGGGAGAGAAGATACAGCCACATTCAAATTTTGGTATGCAGCAGATCACACTTTACTAATTCTAGTTGTCGGGAT
ACGCCAAGGGAATTATGGAAGTAATCTTTATTGAATTCATTTCCTCCATANTAGTAGTTTTTCACACGGTGCGCCACGTT
ATAGGCATCACTGTATGGATGATGATATATATGATAGGAACAATTTATCTATGCCATCCAGAGGATGTGTGGTGTATAAT
GTGTATTTTTGTAGATTTGATGCTGCTTCTGGTTTATGTGAACTCCAAGATTGTCATGTACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11828.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis