Browse Element(s) Details


Os.11856.1.S1_at

Description gb:AK060865.1
DB_XREF= gi:32970883
TID=Os.11856.1
CNT=56
FEA=FLmRNA
TIER=FL+Stack
STK=18
UG=Os.11856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128K16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G11, full insert sequence.
FL= gb:AK060865.1 gb:AK072490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4948011/11Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49430Os.7913.1.S1_a_at11/116+29948900..29953876Protein kinase domain containing protein, expressed
LOC_Os06g49440Os.24609.1.A1_s_at11/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49440Os.52405.1.S1_at1/116+29954725..29959779Carboxylesterase, putative, expressed
LOC_Os06g49450Os.48739.1.S1_x_at6/116+29960227..29966297expressed protein
LOC_Os06g49460Os.11864.1.S1_at11/116+29967038..29969466RER1B protein, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_s_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49470OsAffx.15997.1.S1_at11/116+29970113..29972187Peptidyl-prolyl cis-trans isomerase 7, putative, expressed
LOC_Os06g49480Os.11856.1.S1_at11/116+29972847..29975324Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os06g49490Os.7425.1.S1_at11/116+29975878..29976669zinc finger family protein, putative, expressed
LOC_Os06g49500Os.14849.1.S1_a_at11/116+29977814..29980993integral membrane family protein, putative, expressed
LOC_Os06g49510Os.9402.1.S1_at11/116+29989036..29993453Zinc knuckle family protein, expressed
LOC_Os06g49520Os.10011.1.S1_at11/116+29993594..29995122D-isomer specific 2-hydroxyacid dehydrogenases, putative, expressed
LOC_Os06g49530Os.17021.1.S1_at10/116+29995313..29998223F-box domain containing protein, expressed
LOC_Os06g49540Os.14919.1.S1_at7/116+29999124..30005104transposon protein, putative, Mutator sub-class
LOC_Os06g49540Os.56216.1.S1_at2/116+29999124..30005104transposon protein, putative, Mutator sub-class
LOC_Os06g49540OsAffx.29313.1.S1_at1/116+29999124..30005104transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0007165biological_processsignal transduction
GO:0005624cellular_componentmembrane fraction
GO:0005829cellular_componentcytosol
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11856.1.S1_at--1139--8231Chr06:29974480..29974504 (25 bp)
GGCAAAGCACTCCACTTCAAGGGAA
LOC_Os06g49480
Os.11856.1.S1_at--515--5211Chr06:29974517..29974541 (25 bp)
GAATTATACCCAGCTTTATGATCCA
LOC_Os06g49480
Os.11856.1.S1_at--147--8051Chr06:29974772..29974796 (25 bp)
GGAGAGACACAAACGGGTCCCAGTT
LOC_Os06g49480
Os.11856.1.S1_at--705--1711Chr06:29974813..29974936 (25 bp)
ACCACCAGCTGGTTGGACGGGAAGC
LOC_Os06g49480
Os.11856.1.S1_at--1094--3991Chr06:29974938..29974962 (25 bp)
CGTCGTGTTCGGTAAGGTGCTGTCT
LOC_Os06g49480
Os.11856.1.S1_at--40--6291Chr06:29975073..29975097 (25 bp)
GATGTTTCACTGAAGCTACTGCTAC
LOC_Os06g49480
Os.11856.1.S1_at--512--1971Chr06:29975090..29975114 (25 bp)
ACTGCTACTGCTTCTCGTTGTAGAA
LOC_Os06g49480
Os.11856.1.S1_at--806--6951Chr06:29975109..29975133 (25 bp)
GTAGAACTGTTATTAGCTGCTCTGT
LOC_Os06g49480
Os.11856.1.S1_at--731--4771Chr06:29975124..29975148 (25 bp)
GCTGCTCTGTTTTGCTATGCTTCTA
LOC_Os06g49480
Os.11856.1.S1_at--745--10511Chr06:29975144..29975168 (25 bp)
TTCTACCCCGAATCTGGTTGGAGTA
LOC_Os06g49480
Os.11856.1.S1_at--237--351Chr06:29975184..29975208 (25 bp)
ATAACAGCGTGCTTATATCGCCTCT
LOC_Os06g49480
Target Sequence 
GGCAAAGCACTCCACTTCAAGGGAAGTGCATTCCACAGAATTATACCCAGCTTTATGATCCAAGGAGGTGACTTCACACT
TGGTGATGGAAGGNGGTGGTGAATCTATCTATGGGACGAAGTTCGCCGATGAAAACTTCAAGATCAAGCACACCGGACCA
GGCCTCCTGTCCATGGCCAATGCTGGGAGAGACACAAACGGGTCCCAGTTTTTCATCACCACTGTAACCACCAGCTGGTT
GGACGGGAAGCACGTCGTGTTCGGTAAGGTGCTGTCTGGAATGGATGTGGTTTACAAGATTGAAGCTGAGGGCCAGCAGA
GTGGGTCACCGAAGAGCAAAGTTGTCATCGCGGACAGCGGCGAACTGCCGATGTAATGAGCTGAAATGATGTTTCACTGA
AGCTACTGCTACTGCTTCTCGTTGTAGAACTGTTATTAGCTGCTCTGTTTTGCTATGCTTCTACCCCGAATCTGGTTGGA
GTAAATTTCTGTTAGACTATAACAGCGTGCTTATATCGCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis