Browse Element(s) Details


Os.11863.2.S1_at

Description gb:AK120369.1
DB_XREF= gi:37989992
TID=Os.11863.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107K01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013070J04, full insert sequence.
FL= gb:AK120369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4155011/11group II intron splicing factor CRS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41510OsAffx.26416.1.S1_at11/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41510Os.52463.1.S1_x_at9/114+24396460..24405557RWD domain containing protein, expressed
LOC_Os04g41520Os.45957.4.S1_x_at1/114+24406296..24411088retrotransposon protein, putative, unclassified
LOC_Os04g41530Os.24642.1.S1_at4/114+24412136..24416746serine/threonine-protein kinase GCN2, putative
LOC_Os04g41540OsAffx.14232.1.S1_x_at11/114+24421526..24422116EF hand family protein
LOC_Os04g41550Os.11863.2.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.3.S1_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41550Os.11863.1.S1_x_at11/114+24425118..24428768group II intron splicing factor CRS1, putative, expressed
LOC_Os04g41560Os.12805.1.S1_at11/114+24428811..24430302B-box zinc finger family protein, expressed
LOC_Os04g41570Os.55009.1.S1_at11/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41570Os.6328.1.S1_at10/114+24436019..24440974ER33 protein, putative, expressed
LOC_Os04g41580Os.51458.1.S1_at11/114+24448167..24451886expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11863.2.S1_at--587--9931Chr04:24428363..24428387 (25 bp)
TACGGCGAGGTAATCTGCATTGTGG
LOC_Os04g41550
Os.11863.2.S1_at--24--3611Chr04:24428380..24428404 (25 bp)
CATTGTGGGCCAGTGATGATCCTTT
LOC_Os04g41550
Os.11863.2.S1_at--446--2831Chr04:24428421..24428445 (25 bp)
AAGTTCAACCGTGCATGTCTGTTTT
LOC_Os04g41550
Os.11863.2.S1_at--1117--431Chr04:24428450..24428474 (25 bp)
ATCTAGTCTAGCCTCATGTTTACCA
LOC_Os04g41550
Os.11863.2.S1_at--27--1731Chr04:24428471..24428495 (25 bp)
ACCAGAGGTTTCAGTTCATAGTCAT
LOC_Os04g41550
Os.11863.2.S1_at--394--8571Chr04:24428495..24428519 (25 bp)
TGGATCGCAGATATGCTCGCTGTAA
LOC_Os04g41550
Os.11863.2.S1_at--132--3791Chr04:24428510..24428534 (25 bp)
CTCGCTGTAACCTGTTCCTGGATAA
LOC_Os04g41550
Os.11863.2.S1_at--1126--51Chr04:24428539..24428563 (25 bp)
ATTGCACCGAGCCAAGGAATGTTCA
LOC_Os04g41550
Os.11863.2.S1_at--959--3471Chr04:24428562..24428586 (25 bp)
CAGGTCTGTTGTGTTGATCTTCTAA
LOC_Os04g41550
Os.11863.2.S1_at--1158--1251Chr04:24428641..24428665 (25 bp)
AGATATGTTCGCTGTAACCTGTTCC
LOC_Os04g41550
Os.11863.2.S1_at--385--2631Chr04:24428656..24428680 (25 bp)
AACCTGTTCCCGGAGCCAAGGAATG
LOC_Os04g41550
Target Sequence 
TACGGCGAGGTAATCTGCATTGTGGGCCAGTGATGATCCTTTGTTTTTTCACTTCATCAAGTTCAACCGTGCATGTCTGT
TTTGTTGATCTAGTCTAGCCTCATGTTTACCAGAGGTTTCAGTTCATAGTCATGGATCGCAGATATGCTCGCTGTAACCT
GTTCCTGGATAAAATAATTGCACCGAGCCAAGGAATGTTCAGGTCTGTTGTGTTGATCTTCTAACTCTATTTTGAGCCTC
ATATTTACCAAAGGTTTCAGTTCATAGTCATAGATCACAGATATGTTCGCTGTAACCTGTTCCCGGAGCCAAGGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11863.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis