Browse Element(s) Details


Os.11921.1.S1_at

Description gb:AK069516.1
DB_XREF= gi:32979540
TID=Os.11921.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022E04, full insert sequence.
FL= gb:AK069516.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7396011/11Drought induced 19 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73890OsAffx.24035.1.S1_s_at10/111+43145881..43147971Transcription initiation factor IIA gamma chain, putative, expressed
LOC_Os01g73900OsAffx.20285.3.S1_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_x_at11/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73900Os.45984.1.S1_at10/111+43148103..43151896DEAD/DEAH box helicase, putative, expressed
LOC_Os01g73910Os.12771.1.S1_at11/111+43152956..43155684expressed protein
LOC_Os01g73920NANA1+43156951..43157768hypothetical protein
LOC_Os01g73930NANA1+43158189..43163669transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g73950Os.8261.1.S1_at11/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73950Os.8261.2.S1_at10/111+43164443..43169453pentatricopeptide, putative, expressed
LOC_Os01g73940Os.12303.1.S1_at11/111+43165822..43166397expressed protein
LOC_Os01g73960Os.11921.1.S1_at11/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_x_at10/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960Os.42960.1.S1_at6/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73960OsAffx.19599.1.S1_x_at1/111+43172618..43174991Drought induced 19 protein containing protein, expressed
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11921.1.S1_at--493--5271Chr01:43174322..43174346 (25 bp)
GAAGGAAACCTTCTAGGCCCAGCAG
LOC_Os01g73960
Os.11921.1.S1_at--1132--4351Chr01:43174364..43174388 (25 bp)
CCAACAATTCAGACCCCTACTTTGA
LOC_Os01g73960
Os.11921.1.S1_at--516--8811Chr01:43174757..43174781 (25 bp)
TGTTGTCTAGTGTTACTTAGCAAGT
LOC_Os01g73960
Os.11921.1.S1_at--1046--731Chr01:43174789..43174813 (25 bp)
ATGTTTTGTGTTTTGTGAGCGCAGA
LOC_Os01g73960
Os.11921.1.S1_at--129--7391Chr01:43174803..43174827 (25 bp)
GTGAGCGCAGATGTATCAGTCATGT
LOC_Os01g73960
Os.11921.1.S1_at--199--7131Chr01:43174821..43174845 (25 bp)
GTCATGTATGCGCAACATCCCCTGG
LOC_Os01g73960
Os.11921.1.S1_at--73--3551Chr01:43174836..43174860 (25 bp)
CATCCCCTGGCTCACAGATATATAA
LOC_Os01g73960
Os.11921.1.S1_at--589--5271Chr01:43174888..43174912 (25 bp)
GAATGCTTGCATACTTTGGCTCCAA
LOC_Os01g73960
Os.11921.1.S1_at--360--3691Chr01:43174901..43174925 (25 bp)
CTTTGGCTCCAAGTTTGTCATATGA
LOC_Os01g73960
Os.11921.1.S1_at--953--5211Chr01:43174924..43174948 (25 bp)
GAATTATTATACATCTGGCAGGAGA
LOC_Os01g73960
Os.11921.1.S1_at--334--8271Chr01:43174940..43174964 (25 bp)
GGCAGGAGAATATGCCATATCCCAT
LOC_Os01g73960
Target Sequence 
GAAGGAAACCTTCTAGGCCCAGCAGCTCATGGCCTACACCCTCCAACAATTCAGACCCCTACTTTGAGGGGCCTCCACAG
TATATGATGAACAACAGGACATACCAAGATCCTGCACCTGATCCACTGCTCTCCCAATTTATCTGCAGCATGGCTCAAAC
TGACACTAACTCGGATAACACAAACACTGAAATTGCAGTTTCAGCAGTCTCACATGATCAGAGGTTGAGTCAGCGTGTGA
CTCTGACTGATGATGCATCCAAGCTGGAACTCAAGGAAAGGTTGCAAAGAATCGAGTTTGTCAAGGAGATAATCATGTCG
ACAATTCTTTAATTTGTTGTCTAGTGTTACTTAGCAAGTTTTATTTATGTTTTGTGTTTTGTGAGCGCAGATGTATCAGT
CATGTATGCGCAACATCCCCTGGCTCACAGATATATAATCTATACCATGTAATATTCTAGTAGATGAATGCTTGCATACT
TTGGCTCCAAGTTTGTCATATGAATTATTATACATCTGGCAGGAGAATATGCCATATCCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis