Browse Element(s) Details


Os.12021.1.S1_at

Description gb:AK065951.1
DB_XREF= gi:32975969
TID=Os.12021.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013045C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045C05, full insert sequence.
FL= gb:AK065951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1629011/11Isoflavone reductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein
LOC_Os12g16270NANA12+9299418..9299704expressed protein
LOC_Os12g16280Os.52396.1.S1_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_s_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_at5/1112+9301941..9308507expressed protein
LOC_Os12g16280Os.17370.2.S1_x_at4/1112+9301941..9308507expressed protein
LOC_Os12g16290Os.12021.1.S1_at11/1112+9312637..9315528Isoflavone reductase homolog, putative, expressed
LOC_Os12g16300OsAffx.31763.1.S1_at11/1112+9319553..9319925hypothetical protein
LOC_Os12g16310OsAffx.26046.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310Os.52323.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310OsAffx.20940.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16320OsAffx.24242.2.S1_at3/1112+9330425..9332427hypothetical protein
LOC_Os12g16320Os.31929.11.S1_x_at1/1112+9330425..9332427hypothetical protein
LOC_Os12g16330OsAffx.26082.3.S1_at2/1112+9337960..9338496retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12021.1.S1_at--940--5211Chr12:9313171..9313195 (25 bp)
GAATATACCTTTTTGCTTAGTAGTA
LOC_Os12g16290
Os.12021.1.S1_at--415--6891Chr12:9313149..9313173 (25 bp)
GTATAGCAGTAGTATATCCTTTTTT
LOC_Os12g16290
Os.12021.1.S1_at--188--3671Chr12:9313077..9313101 (25 bp)
CTTATTTTTCAGTCAATAGCAGTAT
LOC_Os12g16290
Os.12021.1.S1_at--737--1951Chr12:9312973..9312997 (25 bp)
ACTGAATTTTAGCTAGTACTACATA
LOC_Os12g16290
Os.12021.1.S1_at--713--7012Chr12:9312958..9312982 (25 bp)
GTACTACATACTTATCTTATCTTTT
LOC_Os12g16290
Os.12021.1.S1_at--276--3871Chr12:9312916..9312940 (25 bp)
CTGATTTTTCGTTAGTAGTACATAC
LOC_Os12g16290
Os.12021.1.S1_at--488--6691Chr12:9312847..9312871 (25 bp)
GTTCGTACAAGTATCTACTGTCTTT
LOC_Os12g16290
Os.12021.1.S1_at--1158--7131Chr12:9312828..9312852 (25 bp)
GTCTTTTTCAATTAGTAGCAGTATA
LOC_Os12g16290
Os.12021.1.S1_at--259--3571Chr12:9312791..9312815 (25 bp)
CATAATATACATACTTTCTCTGTTT
LOC_Os12g16290
Os.12021.1.S1_at--445--6131Chr12:9312664..9312688 (25 bp)
GAGGGAGTAACATATAACAGCTGCT
LOC_Os12g16290
Os.12021.1.S1_at--1065--2471Chr12:9312649..9312673 (25 bp)
AACAGCTGCTACATGCAAGTATGAT
LOC_Os12g16290
Target Sequence 
GAATATACCTTTTTGCTTAGTAGTATAGCAGTAGTATATCCTTTTTTTTATTTAATAGCAGTATATACTTATTTTTAGTT
AGGAGTAGTATATACTTATTTTTCAGTCAATAGCAGTATATACTTATTTTTCAATTAGGAGTGGTATATACTTATATTCA
GTCAATAGCAGTATATATTTTTTTAGATAGTAGTACATACTGAATTTTAGCTAGTACTACATACTTATCTTATCTTTTTT
AGTTAGTAGTATATACTGATTTTTCGTTAGTAGTACATACTTATTTTTTAAGTTAGTAGATAGTATATGTACTCATTTTA
ATTAGTTCGTACAAGTATCTACTGTCTTTTTCAATTAGTAGCAGTATATACTTACTTTTACATAATATACATACTTTCTC
TGTTTCACAATGTAAGTTATTTTAGCATTTTTCACATTCATATTGTCTAGATTCATTAACATCAACATGAATATGGGAAA
TGTTAGAATGACTTACATTATGAAACAGAGGGAGTAACATATAACAGCTGCTACATGCAAGTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis