Browse Element(s) Details


Os.12044.1.S1_at

Description gb:AK071006.1
DB_XREF= gi:32981029
TID=Os.12044.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078I12, full insert sequence.
FL= gb:AK071006.1 gb:AK101502.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0333011/11Lil3 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03280Os.6263.1.S1_at11/112+1326922..1330305Bax inhibitor-1, putative, expressed
LOC_Os02g03294NANA2+1331397..1333193cyclin family protein, putative, expressed
LOC_Os02g03310OsAffx.11873.1.S1_at10/112+1334563..1338610KH domain containing protein, expressed
LOC_Os02g03320OsAffx.24080.1.S1_at11/112+1341178..1344289beta-fructofuranosidase, putative, expressed
LOC_Os02g03330Os.12044.1.S1_at11/112+1344690..1347018Lil3 protein, putative, expressed
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009765biological_processphotosynthesis, light harvesting
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12044.1.S1_at--1131--311Chr02:1346298..1346322 (25 bp)
ATACTTCAATCATACCGTGGTGGGC
LOC_Os02g03330
Os.12044.1.S1_at--549--6611Chr02:1346518..1346542 (25 bp)
GATTGGCTTCTTCATGGCATACTTT
LOC_Os02g03330
Os.12044.1.S1_at--624--311Chr02:1346536..1346560 (25 bp)
ATACTTTGTTGATAGCTTGACCGGC
LOC_Os02g03330
Os.12044.1.S1_at--1020--8271Chr02:1346565..1346589 (25 bp)
GGCTTGTCGACCAGATGGGCAACTT
LOC_Os02g03330
Os.12044.1.S1_at--976--2371Chr02:1346598..1346622 (25 bp)
AAACCCTACTGTTTGTTGCTGTGGC
LOC_Os02g03330
Os.12044.1.S1_at--432--8231Chr02:1346710..1346734 (25 bp)
GGCAACCTGGCAAGATGAGTCCCCT
LOC_Os02g03330
Os.12044.1.S1_at--840--3051Chr02:1346770..1346794 (25 bp)
AATCTGAATCCTCCCTATGTTGTAT
LOC_Os02g03330
Os.12044.1.S1_at--458--51Chr02:1346793..1346817 (25 bp)
ATTGTATCACTTCTTTTTGCAGCCC
LOC_Os02g03330
Os.12044.1.S1_at--884--1171Chr02:1346889..1346913 (25 bp)
AGTACGAACTCGTTTCTGTGCTAGA
LOC_Os02g03330
Os.12044.1.S1_at--793--6651Chr02:1346921..1346945 (25 bp)
GTTGCTGCGGGTTACTTGGTTGAAT
LOC_Os02g03330
Os.12044.1.S1_at--266--3171Chr02:1346960..1346984 (25 bp)
AATTGCTTGTACTAGTTACTCCCTC
LOC_Os02g03330
Target Sequence 
ATACTTCAATCATACCGTGGTGGGCATGGATGAAGCGTTTCCATCTCCCTGAAGCCGAGAAGCTAAATGGCCGTGCTGCC
NATGATTGGCTTCTTCATGGCATACTTTGTTGATAGCTTGACCGGCGTGGGGCTTGTCGACCAGATGGGCAACTTCTTCT
GCAAAACCCTACTGTTTGTTGCTGTGGCTGGTGTGCTGCTGGTCAGGAAAAACGAGGACATAGAGACAGTGAAGAAGCTC
ATCGATGAGACGACGTTCTACGACAAGCAATGGCAGGCAACCTGGCAAGATGAGTCCCCTTCTCAGCCCAAGAAATAGCT
CTGAAGTGGAATCTGAATCTGAATCCTCCCTATGTTGTATTGTATCACTTCTTTTTGCAGCCCTTTTCTCAACCCATTTA
TTAGTGAGGCTCAGTACATTTTGATGNATCTTAATACCTATGACGTCTTGTAAAAAGTACGAACTCGTTTCTGTGCTAGA
GGTTAACGTTGCTGCGGGTTACTTGGTTGAATGTTTTCTTTGTGAGAATTGCTTGTACTAGTTACTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis