Browse Element(s) Details


Os.1205.1.S1_at

Description gb:AK063645.1
DB_XREF= gi:32973663
TID=Os.1205.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.1205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative late embryogenesis abundant protein LEA14-A (P0492F05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H06, full insert sequence.
FL= gb:AK063645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1258011/11Late embryogenesis abundant protein Lea14-A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12580Os.1205.1.S1_at11/111+6918942..6919498Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified
LOC_Os01g12600NANA1+6931584..6935002retrotransposon protein, putative, unclassified, expressed
LOC_Os01g12610OsAffx.24317.2.S1_x_at2/111+6937185..6937574hypothetical protein
LOC_Os01g12610OsAffx.30665.1.A1_x_at1/111+6937185..6937574hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009644biological_processresponse to high light intensity
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1205.1.S1_at--1052--8391Chr01:6919338..6919362 (25 bp)
GGCGCGTGGACGTGCGCAACCCCTA
LOC_Os01g12580
Os.1205.1.S1_at--101--551Chr01:6919303..6919327 (25 bp)
ATCCCGATCTGCGAGGTGAGCTACT
LOC_Os01g12580
Os.1205.1.S1_at--138--8531Chr01:6919197..6919221 (25 bp)
TGGACATCCCGGTGAAGGTGCCGTA
LOC_Os01g12580
Os.1205.1.S1_at--1144--2852Chr01:25260240..25260638 (25 bp)
AAGGTGCCGTACGACTTCCTGGTGA
NONE
Os.1205.1.S1_at--26--2071Chr01:6919170..6919194 (25 bp)
ACTTCCTGGTGAGCCTCGCCAGGGA
LOC_Os01g12580
Os.1205.1.S1_at--774--9931Chr01:6919120..6919144 (25 bp)
TACGAGATGAGGGTCGGCCTCACCG
LOC_Os01g12580
Os.1205.1.S1_at--1060--9491Chr01:6919026..6919050 (25 bp)
TCTCCGACGTCTTCTAAATCGGCAT
LOC_Os01g12580
Os.1205.1.S1_at--1156--4011Chr01:6919019..6919043 (25 bp)
CGTCTTCTAAATCGGCATCGTGCAC
LOC_Os01g12580
Os.1205.1.S1_at--278--511Chr01:6919003..6919027 (25 bp)
ATCGTGCACACGTACGGGCCGAGTG
LOC_Os01g12580
Os.1205.1.S1_at--968--1911Chr01:6918990..6919014 (25 bp)
ACGGGCCGAGTGTACGAGAACTTGT
LOC_Os01g12580
Os.1205.1.S1_at--316--5491Chr01:6918973..6918997 (25 bp)
GAACTTGTGTATTTCCAGACTTCTG
LOC_Os01g12580
Target Sequence 
GGCGCGTGGACGTGCGCAACCCCTACTCCCACTCCATCCCGATCTGCGAGGTGAGCTACTCGCTGAAGAGCGCCGGGAGG
GAGGTGGCGTCGGGGACGATGCCCGACCCGGGGTCGCTCACCGCCGGCGACACCACGCGGCTGGACATCCCGGTGAAGGT
GCCGTACGACTTCCTGGTGAGCCTCGCCAGGGACGCCGGCAGGGACTGGGACATCGACTACGAGATGAGGGTCGGCCTCA
CCGTCGACCTCCCCATCCTCGGCAACTTCACCCTGCCGCTCACCAAGTCCGGCGAGCTCAAGCTCCCCACCCTCTCCGAC
GTCTTCTAAATCGGCATCGTGCACACGTACGGGCCGAGTGTACGAGAACTTGTGTATTTCCAGACTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis