Browse Element(s) Details


Os.46746.1.S1_at

Description gb:AK121971.1
DB_XREF= gi:37991594
TID=Os.46746.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46746 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033108H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108H21, full insert sequence.
FL= gb:AK121971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1254011/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12580Os.1205.1.S1_at11/111+6918942..6919498Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46746.1.S1_at--148--2131Chr01:6900443..6900467 (25 bp)
ACAGCAGGAATACCGGTCCTAGGAT
LOC_Os01g12540
Os.46746.1.S1_at--95--9971Chr01:6900453..6900477 (25 bp)
TACCGGTCCTAGGATCAATACCAGG
LOC_Os01g12540
Os.46746.1.S1_at--40--951Chr01:6900493..6900517 (25 bp)
AGGACAACAGTATGTGAACCCACTA
LOC_Os01g12540
Os.46746.1.S1_at--574--7351Chr01:6900506..6900530 (25 bp)
GTGAACCCACTACGTCATAGAGGAT
LOC_Os01g12540
Os.46746.1.S1_at--23--7411Chr01:6900687..6900711 (25 bp)
GTGATCAAGATGGTAGCCGTTTGCT
LOC_Os01g12540
Os.46746.1.S1_at--527--9991Chr01:6900700..6900724 (25 bp)
TAGCCGTTTGCTGATTGTTGAGAAG
LOC_Os01g12540
Os.46746.1.S1_at--236--951Chr01:6900727..6900751 (25 bp)
AGGAAAGCAATCTAACCGTGATGTG
LOC_Os01g12540
Os.46746.1.S1_at--112--6271Chr01:6900746..6900770 (25 bp)
GATGTGGTGATACTAATTTCTCCTG
LOC_Os01g12540
Os.46746.1.S1_at--644--191Chr01:6900761..6900785 (25 bp)
ATTTCTCCTGAGAACCGTGGAAAGG
LOC_Os01g12540
Os.46746.1.S1_at--786--2511Chr01:6900973..6900997 (25 bp)
AACTAGTGTGTTTGTACGGATAATC
LOC_Os01g12540
Os.46746.1.S1_at--899--2931Chr01:6901006..6901030 (25 bp)
AAGGCATTGACTTGAAACAACGTTT
LOC_Os01g12540
Target Sequence 
ACAGCAGGAATACCGGTCCTAGGATCAATACCAGGATGAGAACAGATAAAAGGACAACAGTATGTGAACCCACTACGTCA
TAGAGGATGCTGGCNCGACGTACTNCGAGCTAACCCTNCAGAAGGGCGGCAATCTTCAGTGGTTGCTTTGTTATGAAGGT
GACCTAGCTGATGGAAGAGAAACTGCTGCGTTTCAGTCAAAAAATGTAGCCAGTGGTTTAGCTAGCTTTGCTGCCTGCAC
CGAAGTGATCAAGATGGTAGCCGTTTGCTGATTGTTGAGAAGAAAGGAAAGCAATCTAACCGTGATGTGGTGATACTAAT
TTCTCCTGAGAACCGTGGAAAGGTGCNTCCTCTGCTTCGATTATCGAAGCCTGAAGGCAACGGCTGTGGTAGTGTTTTCG
ACAAAGCACAATGGATGGAGTATGACATCGAACTTATTTGTCAGGATGAAATCATGTTCTGTATTGTACAGAGAATAGAC
AAAAGGTGTTCTGAGTTTCGACCCATTCGGAGCTTCACCTAACAAAATAAAACTAGTGTGTTTGTACGGATAATCTGGAT
GTTAAGGCATTGACTTGAAACAACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis