Browse Element(s) Details


Os.9825.1.S1_at

Description gb:CA758404
DB_XREF= gi:25802443
DB_XREF=BR050015000B10.ab1
CLONE=BR050015000B10.ab1
TID=Os.9825.1
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9825 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565547.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g125301/11Smr domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9825.1.S1_at--449--3511Chr03:18577721..18577745 (25 bp)
CATGTGCACCACATCTGAAGTGAAA
NONE
Os.9825.1.S1_at--86--1411Chr03:18577777..18577801 (25 bp)
AGACAGATGTGTACCAGTGCTTCCC
NONE
Os.9825.1.S1_at--593--3411Chr03:18577828..18577852 (25 bp)
CAGCAAGCTGTATCATGGTCATGGA
NONE
Os.9825.1.S1_at--274--6771Chr03:18577871..18577895 (25 bp)
GTTAATGTTTGGGTCAGTTGCCATT
NONE
Os.9825.1.S1_at--460--1231Chr03:18577886..18577910 (25 bp)
AGTTGCCATTAGTCCTGAGGTTTCT
NONE
Os.9825.1.S1_at--1107--6151Chr03:18577902..18577926 (25 bp)
GAGGTTTCTCTCTTCTGATGGAGCT
NONE
Os.9825.1.S1_at--244--9871Chr03:18577930..18577954 (25 bp)
TACATGTTGTTTGCTACCGTCTGAT
NONE
Os.9825.1.S1_at--78--8851Chr03:18577951..18577975 (25 bp)
TGATCATGCGTCCTGTCCTATGTTA
NONE
Os.9825.1.S1_at--741--7251Chr03:18577960..18577984 (25 bp)
GTCCTGTCCTATGTTACTCTACATA
NONE
Os.9825.1.S1_at--268--2652Chr03:18578027..18578051 (25 bp)
AACCAGATTGATTGTCTACCTGATC
NONE
Os.9825.1.S1_at--1060--6431Chr03:18578048..18578072 (25 bp)
GATCATGAGAATTCTGTGCCAATTT
NONE
Target Sequence 
CATGTGCACCACATCTGAAGTGAAATGCCGGGAGCATGCAGAAGCTAAGCATCCAAAGACAGATGTGTACCAGTGCTTCC
CCCATCTCAAGAAATGAAAGATTGTACCAGCAAGCTGTATCATGGTCATGGAATCCAGAAAAATTTGAAAGTTAATGTTT
GGGTCAGTTGCCATTAGTCCTGAGGTTTCTCTCTTCTGATGGAGCTCCTTACATGTTGTTTGCTACCGTCTGATCATGCG
TCCTGTCCTATGTTACTCTACATAAGAAAGTGATGTGGTTTCCAACTAAGATATTGTCTGCTGTTAAACCAGATTGATTG
TCTACCTGATCATGAGAATTCTGTGCCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis