Browse Element(s) Details


OsAffx.23218.1.S1_at

Description tigr:9629.m01216
TID=OsAffx.23218.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Smr domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1253011/11Smr domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23218.1.S1_at--1058--7851Chr01:6891023..6891047 (25 bp)
GGTATGTTGTTTTAGCCACTGTTAT
LOC_Os01g12530
OsAffx.23218.1.S1_at--895--3871Chr01:6891041..6891065 (25 bp)
CTGTTATTTGTGTCGTTATTTGTTA
LOC_Os01g12530
OsAffx.23218.1.S1_at--845--10471Chr01:6891108..6891132 (25 bp)
TTACTTCCTTTATTTCTGGCAATTT
LOC_Os01g12530
OsAffx.23218.1.S1_at--742--10611Chr01:6891121..6891145 (25 bp)
TTCTGGCAATTTTTTCTGTATCCAT
LOC_Os01g12530
OsAffx.23218.1.S1_at--742--3871Chr01:6891136..6891160 (25 bp)
CTGTATCCATCTTCTAAATCTGTAG
LOC_Os01g12530
OsAffx.23218.1.S1_at--47--492Chr01:6891153..6891177 (25 bp)
ATCTGTAGCATGTTTTCACATTCTT
LOC_Os01g12530
OsAffx.23218.1.S1_at--448--9691Chr01:6891168..6891192 (25 bp)
TCACATTCTTATTCAATGGCTTCCA
LOC_Os01g12530
OsAffx.23218.1.S1_at--917--2951Chr01:6891182..6891206 (25 bp)
AATGGCTTCCAAATATCACTTTAGA
LOC_Os01g12530
OsAffx.23218.1.S1_at--197--10611Chr01:6891212..6891236 (25 bp)
TTCTGGGAAGTGTAGCTGTTTGAGC
LOC_Os01g12530
OsAffx.23218.1.S1_at--1107--4731Chr01:6891226..6891250 (25 bp)
GCTGTTTGAGCTACCATATAATAAG
LOC_Os01g12530
OsAffx.23218.1.S1_at--1--6471Chr01:6891250..6891274 (25 bp)
GATCAATAATTGTATGACCTTCATT
LOC_Os01g12530
Target Sequence 
GGTATGTTGTTTTAGCCACTGTTATTTGTGTCGTTATTTGTTAAGATCATTAATTTCTTTTTGCATCACATTGAACTTTT
TTCCTTTACTTCCTTTATTTCTGGCAATTTTTTCTGTATCCATCTTCTAAATCTGTAGCATGTTTTCACATTCTTATTCA
ATGGCTTCCAAATATCACTTTAGAATGAATTCTGGGAAGTGTAGCTGTTTGAGCTACCATATAATAAGATCAATAATTGT
ATGACCTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis