Browse Element(s) Details


Os.5405.1.S1_at

Description gb:NM_188546.1
DB_XREF= gi:34904175
GEN=P0492F05.12
TID=Os.5405.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5405 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) GTP-binding protein-like (P0492F05.12), mRNA.
PROD=GTP-binding protein-like
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1254011/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12580Os.1205.1.S1_at11/111+6918942..6919498Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5405.1.S1_at--721--5011Chr01:6900446..6900538 (25 bp)
GCAGGAATACCGAGGATGCTGGCAC
LOC_Os01g12540
Os.5405.1.S1_at--17--3491Chr01:6900447..6900539 (25 bp)
CAGGAATACCGAGGATGCTGGCACG
LOC_Os01g12540
Os.5405.1.S1_at--885--931Chr01:6900448..6900540 (25 bp)
AGGAATACCGAGGATGCTGGCACGA
LOC_Os01g12540
Os.5405.1.S1_at--148--8191Chr01:6900449..6900541 (25 bp)
GGAATACCGAGGATGCTGGCACGAC
LOC_Os01g12540
Os.5405.1.S1_at--603--5231Chr01:6900450..6900542 (25 bp)
GAATACCGAGGATGCTGGCACGACG
LOC_Os01g12540
Os.5405.1.S1_at--353--3091Chr01:6900451..6900543 (25 bp)
AATACCGAGGATGCTGGCACGACGT
LOC_Os01g12540
Os.5405.1.S1_at--706--311Chr01:6900525..6900544 (20 bp)
ATACCGAGGATGCTGGCACGACGTA
LOC_Os01g12540
Os.5405.1.S1_at--340--5331Chr01:6900684..6900782 (25 bp)
GAAGTGATCAAGATGAACCGTGGAA
LOC_Os01g12540
Os.5405.1.S1_at--402--2851Chr01:6900685..6900783 (25 bp)
AAGTGATCAAGATGAACCGTGGAAA
LOC_Os01g12540
Os.5405.1.S1_at--1104--1091Chr01:6900686..6900784 (25 bp)
AGTGATCAAGATGAACCGTGGAAAG
LOC_Os01g12540
Os.5405.1.S1_at--871--8831Chr01:6900688..6900786 (25 bp)
TGATCAAGATGAACCGTGGAAAGGT
LOC_Os01g12540
Target Sequence 
GCAGGAATACCGAGGATGCTGGCACGACGTACTACGAGCTAACCCTACAGAAGGGCGGCAATCTTCAGTGGTTGCTTTGT
TATGAAGGTGACCTAGCTGATGGAAGAGAAACTGCTGCGTTTCAGTCAAAAAATGTAGCCAGTGGTTTAGCTAGCTTTGC
TGCCTGCACCGAAGTGATCAAGATGAACCGTGGAAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis