Browse Element(s) Details


Os.21207.1.S1_at

Description gb:AK100398.1
DB_XREF= gi:32985607
TID=Os.21207.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086M16, full insert sequence.
FL= gb:AK100398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g125307/11Smr domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21207.1.S1_at--707--8951NONE
TGACAGTGACTCTAATTGAGCCTTG
NONE
Os.21207.1.S1_at--931--3451NONE
CAGTGACTCTAATTGAGCCTTGGGT
NONE
Os.21207.1.S1_at--680--5711NONE
GACTCTAATTGAGCCTTGGGTGTCT
NONE
Os.21207.1.S1_at--388--9531NONE
TCTAATTGAGCCTTGGGTGTCTGTT
NONE
Os.21207.1.S1_at--9--3711Chr01:6892863..6892887 (25 bp)
CTATGTATCTCCTGTATCTATCTGT
LOC_Os01g12530
Os.21207.1.S1_at--488--751Chr01:6892865..6892889 (25 bp)
ATGTATCTCCTGTATCTATCTGTAT
LOC_Os01g12530
Os.21207.1.S1_at--195--6911Chr01:6892867..6892891 (25 bp)
GTATCTCCTGTATCTATCTGTATTT
LOC_Os01g12530
Os.21207.1.S1_at--135--10171Chr01:6892868..6892892 (25 bp)
TATCTCCTGTATCTATCTGTATTTA
LOC_Os01g12530
Os.21207.1.S1_at--817--4271Chr01:6892873..6892897 (25 bp)
CCTGTATCTATCTGTATTTACATGT
LOC_Os01g12530
Os.21207.1.S1_at--301--451Chr01:6892878..6892902 (25 bp)
ATCTATCTGTATTTACATGTGTTGT
LOC_Os01g12530
Os.21207.1.S1_at--472--2111Chr01:6892892..6892916 (25 bp)
ACATGTGTTGTAATTATGGATAGGT
LOC_Os01g12530
Target Sequence 
TGACAGTGACTCTAATTGAGCCTTGGGTGTCTGTTTTGAGGAGACTTTACATAGATTAACGGCCGTTCTAATCTATGTAT
CTCCTGTATCTATCTGTATTTACATGTGTTGTAATTATGGATAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis