Browse Element(s) Details


Os.23664.1.S1_at

Description gb:CA760234
DB_XREF= gi:25804273
DB_XREF=BR060013B11B07.ab1
CLONE=BR060013B11B07.ab1
TID=Os.23664.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492F05.13 (P0492F05.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g125506/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12580Os.1205.1.S1_at11/111+6918942..6919498Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23664.1.S1_at--902--3071Chr01:6905803..6905827 (25 bp)
AATCACGATGGTTGGTATCTCAATG
LOC_Os01g12550
Os.23664.1.S1_at--606--5371Chr01:6905908..6905932 (25 bp)
GAAGACTATCTTTAGCGACGAGAAA
LOC_Os01g12550
Os.23664.1.S1_at--564--4391Chr01:6905948..6905972 (25 bp)
GCCAACGTTGGCGATTACTCAAGGA
LOC_Os01g12550
Os.23664.1.S1_at--949--1391Chr01:6905995..6906018 (24 bp)
AGACTGATGAAGTGCTCCTGGTCCC
LOC_Os01g12550
Os.23664.1.S1_at--84--4531NONE
GCCCTTCGCCCATACTGAATTTTTA
NONE
Os.23664.1.S1_at--1111--6491NONE
GATAGTCAATGTTCCAATGCTAATT
NONE
Os.23664.1.S1_at--194--8771NONE
TGTATATTACCCCTTCCTAGGATTT
NONE
Os.23664.1.S1_at--768--3631Chr01:6906136..6906160 (25 bp)
CTTCCTAGGATTTCCAGGTCTGGTA
LOC_Os01g12550
Os.23664.1.S1_at--1140--7031NONE
GTAAATCTGTATATTGCCCCTTCTA
NONE
Os.23664.1.S1_at--740--4531NONE
GCCCCTTCTAGGATTTCTGGATATA
NONE
Os.23664.1.S1_at--818--9891Chr01:6906196..6906220 (25 bp)
TACTTTGGTGTCATATGGTGGCTGT
LOC_Os01g12550
Target Sequence 
AATCACGATGGTTGGTATCTCAATGGGCGAAGGTGGACAGATGAGCAAAGCCANCTTGAAGAAAACAATGGAAGACTTGA
CTAAAGAGTTAGAACAAGCAGGCGAGAAGACTATCTTTAGCGACGAGAAAGACCCNCTCTTTGTTGCCAACGTTGGCGAT
TACTCAAGGATAACTAAGATTAGCTNTACATGAGACTGATGAAGTGCTCCTGGTCCCCATTGCAGCTTATGCCCTTCGCC
CATACTGAATTTTTAACAAAACCAGCCATGATAGTCAATGTTCCAATGCTAATTTGGAAGAACAGGTTATAGTTCTGTAA
ATGTATATTACCCCTTCCTAGGATTTCCAGGTCTGGTAAATCTGTATATTGCCCCTTCTAGGATTTCTGGATATACTTTG
GTGTCATATGGTGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis