Browse Element(s) Details


Os.27142.1.S1_at

Description gb:CB650292
DB_XREF= gi:29645285
DB_XREF=OSJNEb14K16.r
CLONE=OSJNEb14K16
TID=Os.27142.1
CNT=8
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.27142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 3-methyl-2-oxobutanoate hydroxy-methyl-transferase-like protein (P0492F05.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1256011/113-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12580Os.1205.1.S1_at11/111+6918942..6919498Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified
LOC_Os01g12600NANA1+6931584..6935002retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015940biological_processpantothenate biosynthesis
GO:0003864molecular_function3-methyl-2-oxobutanoate hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27142.1.S1_at--324--7311Chr01:6907391..6907415 (25 bp)
GTGCTGGACCATTCTGCAGTGGACA
LOC_Os01g12560
Os.27142.1.S1_at--686--8091Chr01:6907135..6907156 (22 bp)
GGACAGGTCTTAGTTTACCATGACT
LOC_Os01g12560
Os.27142.1.S1_at--116--3211Chr01:6906972..6906994 (23 bp)
CAAGGTCACACCGAAATTCTGCAAA
LOC_Os01g12560
Os.27142.1.S1_at--1088--10591Chr01:6906709..6906733 (25 bp)
TTCTGTTGGTGGCTTCGAGCATCAG
LOC_Os01g12560
Os.27142.1.S1_at--359--5931Chr01:6906693..6906717 (25 bp)
GAGCATCAGAGCCTGCCACAATGTC
LOC_Os01g12560
Os.27142.1.S1_at--992--2971Chr01:6906674..6906698 (25 bp)
AATGTCGCCACATCTCTCAATGCAA
LOC_Os01g12560
Os.27142.1.S1_at--574--9531Chr01:6906660..6906684 (25 bp)
TCTCAATGCAATCCTGCCAAGGCTG
LOC_Os01g12560
Os.27142.1.S1_at--501--9791Chr01:6906629..6906653 (25 bp)
TAACTGTTGTCGGAAACGCCTGCAC
LOC_Os01g12560
Os.27142.1.S1_at--893--2371Chr01:6906616..6906640 (25 bp)
AAACGCCTGCACAGTGTTTGGGTAA
LOC_Os01g12560
Os.27142.1.S1_at--177--6871Chr01:6906601..6906625 (25 bp)
GTTTGGGTAATCTTTCCTATGCCCT
LOC_Os01g12560
Os.27142.1.S1_at--427--9231Chr01:6906587..6906611 (25 bp)
TCCTATGCCCTAACGTGAGTCTTAA
LOC_Os01g12560
Target Sequence 
GTGCTGGACCATTCTGCAGTGGACAGGTCTTAGTTTACCATGACTTGTTAGGGATGATGCAACATCCACACCATGCCAAG
GTCACACCGAAATTCTGCAAACAATTTGGAAATGTCGGTCATGTCATCANCAAGGCTCTATCGGAGTACAAGCAGGAAGT
GGAAACCCGGAGTTTCCCAGGTNCCAGCCATACGCCGTACAAGATANCTGCCGCGGATGTGGATGGCTTCGCGAATGCAC
TGCAGAAGATGGGCTTGGACGAGGCTGCAAATGCTGCAGCTGCCGCAGCTGAAAACGCAGAGAAAGATGGAGAACTACCC
GAGAACAAATGATTTTTTTTTCTGTTGGTGGCTTCGAGCATCAGAGCCTGCCACAATGTCGCCACATCTCTCAATGCAAT
CCTGCCAAGGCTGCAGGGGTAACTGTTGTCGGAAACGCCTGCACAGTGTTTGGGTAATCTTTCCTATGCCCTAACGTGAG
TCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis