Browse Element(s) Details


Os.45987.1.S1_x_at

Description gb:CB677322
DB_XREF= gi:29681047
DB_XREF=OSJNEe14C06.r
CLONE=OSJNEe14C06
TID=Os.45987.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PRLI-interacting factor N (P0492F05.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1253011/11Smr domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12510OsAffx.1990.1.S1_at11/111+6872690..6872902hypothetical protein
LOC_Os01g12520OsAffx.23217.1.S1_x_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12520OsAffx.23217.1.S1_at11/111+6876707..6878770Mitochondrial carrier protein, expressed
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006298biological_processmismatch repair
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45987.1.S1_x_at--1096--711Chr01:6892125..6892146 (22 bp)
ATGATTTGTGTGTGCATGCCAACCA
LOC_Os01g12530
Os.45987.1.S1_x_at--496--591Chr01:6891804..6892294 (25 bp)
ATGCCAACCACCTTTCTTAGAGTAA
LOC_Os01g12530
Os.45987.1.S1_x_at--565--5511Chr01:6892729..6892753 (25 bp)
GAAAATGCCGGGACCATAGTACTAA
LOC_Os01g12530
Os.45987.1.S1_x_at--561--10051Chr01:6892745..6892769 (25 bp)
TAGTACTAAGGCTTGGTGGCCCAAG
LOC_Os01g12530
Os.45987.1.S1_x_at--187--7531Chr01:6892760..6892784 (25 bp)
GTGGCCCAAGGGAGTATCGTTTCCT
LOC_Os01g12530
Os.45987.1.S1_x_at--1--8051Chr01:6892770..6892794 (25 bp)
GGAGTATCGTTTCCTTGAGCATGAC
LOC_Os01g12530
Os.45987.1.S1_x_at--156--7211Chr01:6892924..6892948 (25 bp)
GTCGTCCTCTGATGTAGGGCTGTAG
LOC_Os01g12530
Os.45987.1.S1_x_at--720--751Chr01:6893002..6893026 (25 bp)
ATGTAATGATCGTTGTAGGCTCTGA
LOC_Os01g12530
Os.45987.1.S1_x_at--248--7071Chr01:6893028..6893052 (25 bp)
GTAATGATCATTGTAGGCTGCTAAC
LOC_Os01g12530
Os.45987.1.S1_x_at--159--8331Chr01:6893043..6893067 (25 bp)
GGCTGCTAACCTTGTAATGAACTCT
LOC_Os01g12530
Os.45987.1.S1_x_at--1023--5451Chr01:6893061..6893085 (25 bp)
GAACTCTAGCTATGTACCTGTCTAA
LOC_Os01g12530
Target Sequence 
ATGATTTGTGTGTGCATGCCAACCACCTTTCTTAGAGTAATTACTGGTTGTGGTGTAGAAGGCACAGGGAAGGGAAAAAT
AAAGCGCGCGGTTGCCGAGCTTGTGGAGAAGGAAGGCGTTGAGTGGCATGAGGAAAATGCCGGGACCATAGTACTAAGGC
TTGGTGGCCCAAGGGAGTATCGTTTCCTTGAGCATGACNGTGACTCTGATTGAGCCTTNGGGTGTCTGTTTTGAGGAGAC
TTTACATAGATTAACGGCCGNTCTAATCTATGNATCTCCTGNATCTATCTGNATTTACATGNGNTTGNAATTATGGATAG
GTGACCTANGTCGTCCTCTGATGTAGGGCTGTAGTTTCTGACNTACAGGCTCNGGAATAGCAAGGAGTAGAGAACAGGNG
CTGTCTGATGTAATGATCGTTGTAGGCTCTGATGTAATGATCATTGTAGGCTGCTAACCTTGTAATGAACTCTAGCTATG
TACCTGTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45987.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis