Browse Element(s) Details


Os.12080.1.S1_at

Description gb:AK065085.1
DB_XREF= gi:32975103
TID=Os.12080.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001L17, full insert sequence.
FL= gb:AK062230.1 gb:AK065085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0933011/11Ubiquitin-conjugating enzyme E2 J2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g09280Os.50933.2.S1_x_at11/116+4658378..4665891Helicase associated domain family protein, expressed
LOC_Os06g09290Os.291.1.S1_at11/116+4666493..466988926S protease regulatory subunit 7, putative, expressed
LOC_Os06g09300OsAffx.4779.1.S1_at11/116+4671873..4672673hypothetical protein
LOC_Os06g09310Os.52944.1.A1_at11/116+4677839..4679100Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g09320Os.18144.1.S1_at11/116+4686061..4689299tac7077, putative, expressed
LOC_Os06g09330Os.12080.1.S1_at11/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09330Os.20722.1.S1_a_at1/116+4689943..4694298Ubiquitin-conjugating enzyme E2 J2, putative, expressed
LOC_Os06g09340OsAffx.27525.1.S1_x_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09340OsAffx.27525.1.S1_at11/116+4699553..4702228Pectinesterase family protein, expressed
LOC_Os06g09350Os.7764.1.S1_at9/116+4702900..4703883expressed protein
LOC_Os06g09370Os.8790.1.S1_a_at11/116+4708745..4714553Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12080.1.S1_at--57--8611Chr06:4691223..4691637 (25 bp)
TGGTCTGTGGCAAGCATTCTCACGG
LOC_Os06g09330
Os.12080.1.S1_at--1127--7551Chr06:4690783..4691224 (25 bp)
GGGCCTCCTTTCATTCATGATGGAT
LOC_Os06g09330
Os.12080.1.S1_at--211--5131Chr06:4690385..4690409 (25 bp)
GCAAAAATTGCCCTCACTTCAGGAA
LOC_Os06g09330
Os.12080.1.S1_at--782--2431Chr06:4690362..4690386 (25 bp)
AAAATGTTTCCAGAGTACGTCGAGA
LOC_Os06g09330
Os.12080.1.S1_at--78--5531Chr06:4690293..4690317 (25 bp)
GAAACTCAAGAGAACCCTGCCCCAG
LOC_Os06g09330
Os.12080.1.S1_at--423--3171Chr06:4690228..4690252 (25 bp)
CAATAAGGCGAAACCTGCGGCGGAG
LOC_Os06g09330
Os.12080.1.S1_at--1146--9451Chr06:4690143..4690167 (25 bp)
TCTGTTTTTGGTGCGGTGATGGCCT
LOC_Os06g09330
Os.12080.1.S1_at--1071--10271Chr06:4690040..4690064 (25 bp)
TTTCCCAAGGTTTGCGTAACTCGAT
LOC_Os06g09330
Os.12080.1.S1_at--824--7051Chr06:4690025..4690049 (25 bp)
GTAACTCGATTCTTCTGTGGACTCT
LOC_Os06g09330
Os.12080.1.S1_at--794--9451Chr06:4690012..4690036 (25 bp)
TCTGTGGACTCTCTTCACTTTGGTG
LOC_Os06g09330
Os.12080.1.S1_at--417--10031Chr06:4689974..4689998 (25 bp)
TAGAACCATATCCTCTCTTTACAGA
LOC_Os06g09330
Target Sequence 
TGGTCTGTGGCAAGCATTCTCACGGGCCTCCTTTCATTCATGATGGATGATGCTCTGACAACTGGAAGCATCAGGAGTAC
AGAGGGGGAAAAGAGACGTTTAGCAAAGGCTTCCCTTGCCTACAACTGTGAGAGCAAAAATTGCCCTCACTTCAGGAAAA
TGTTTCCAGAGTACGTCGAGAAATACNAACCAACAGAAACAGATGGAGCAAACCGTAGCGGAACCAGAAACTCAAGAGAA
CCCTGCCCCAGCTCCATCTCCTGCGGTCCAACAACAGGCTGCAGTAGTAGCCAATAAGGCGAAACCTGCGGCGGAGGCCG
CAGGCGAGCAGAAGCAGAAGAAGCGAGTGCCCTTCTGGATGATGCTGGTTATGTTTTCTGTTTTTGGTGCGGTGATGGCC
TTGCCCCTGATGCAACTCTGACAAATAAAATAAAAAGAGGCTATAAAAGTGTGATACCGGGGGGTAATTTTTGTATAGTT
TTCCCAAGGTTTGCGTAACTCGATTCTTCTGTGGACTCTCTTCACTTTGGTGATGGTAAAATCTGTAGAACCATATCCTC
TCTTTACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis