Browse Element(s) Details


Os.12086.1.S1_s_at

Description gb:AK064048.1
DB_XREF= gi:32974066
TID=Os.12086.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative c-myc binding protein (OSJNBb0049A16.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D11, full insert sequence.
FL= gb:AK064048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3467011/11prefoldin subunit 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34690OsAffx.8001.1.S1_at10/1110+18168188..18169291NA
LOC_Os10g34694OsAffx.8001.1.S1_at1/1110+18169990..18170937hypothetical protein
LOC_Os10g34700Os.46840.1.S1_x_at11/1110+18175013..18176806expressed protein
LOC_Os10g34700Os.46840.1.S1_at11/1110+18175013..18176806expressed protein
LOC_Os10g34702NANA10+18179086..18180586hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0016272cellular_componentprefoldin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12086.1.S1_s_at--763--8531Chr10:18145877..18145901 (25 bp)
TGGACGACTCCGAGAAGGTGCTCGT
LOC_Os10g34670
Os.12086.1.S1_s_at--839--5611Chr10:18154751..18154775 (25 bp)
GACGAAATGGGTCGGCTTCTACAAG
LOC_Os10g34670
Os.12086.1.S1_s_at--32--7171Chr10:18154832..18154856 (25 bp)
GTCTCCACCTTGTTAGATGGCCAGG
LOC_Os10g34670
Os.12086.1.S1_s_at--672--2251Chr10:18154893..18154917 (25 bp)
AAATTTTTAGCTGCTGCTCTGGTCG
LOC_Os10g34670
Os.12086.1.S1_s_at--25--4811Chr10:18154908..18154932 (25 bp)
GCTCTGGTCGTGTGTCTGTGCAAAG
LOC_Os10g34670
Os.12086.1.S1_s_at--163--8691Chr10:18154924..18154948 (25 bp)
TGTGCAAAGGCAACCGGTTCACTTC
LOC_Os10g34670
Os.12086.1.S1_s_at--1018--4211Chr10:18154937..18154961 (25 bp)
CCGGTTCACTTCCATGGTTTACTGA
LOC_Os10g34670
Os.12086.1.S1_s_at--401--6832Chr12:24172318..24172412 (25 bp)
GTTTACTGAAAGAACCTGCCTCATC
NONE
Os.12086.1.S1_s_at--814--1011Chr10:18154978..18155002 (25 bp)
AGGTTAGCCCAGAAGCCGGTGTTGA
LOC_Os10g34670
Os.12086.1.S1_s_at--741--151Chr10:18155088..18155112 (25 bp)
ATTAGACATTTTGCTGCTGTTCCCT
LOC_Os10g34670
Os.12086.1.S1_s_at--665--4731Chr10:18155103..18155127 (25 bp)
GCTGTTCCCTGTTTCTGGAAGACGA
LOC_Os10g34670
Target Sequence 
TGGACGACTCCGAGAAGGTGCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAAACTATGACTGAAGGCAAAGAATAC
TGTGAAAGGAAAATTAATTTGCTGAAGTCTAATTTTGATGAACTAGTTGAGATGGCTACGAAGAAGAAAAACATAGCCGA
CGAAATGGGTCGGCTTCTACAAGCCAAGCTGAGGCAGTCATCGCCGAGCCCGAGTTCATGAGACCCGACCGCACCTCCTG
TCTCCACCTTGTTAGATGGCCAGGTTGAGTAGTTTGTGGCATCTATCTAGCCAACATAGAAAATTTTTAGCTGCTGCTCT
GGTCGTGTGTCTGTGCAAAGGCAACCGGTTCACTTCCATGGTTTACTGAAAGAACCTGCCTCATCAGGTTAGCCCAGAAG
CCGGTGTTGAACACGCAAATTTTATTGGCTCAAGTCGCAGNTAGCCGAATTGTGATAATCATTTGTGTGGTTGTTAAATC
AGAATGGCTGATTTCATTAGACATTTTGCTGCTGTTCCCTGTTTCTGGAAGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12086.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis