Browse Element(s) Details


Os.12089.1.S1_at

Description gb:AK062499.1
DB_XREF= gi:32972517
TID=Os.12089.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-A06, full insert sequence.
FL= gb:AK062499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4097411/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12089.1.S1_at--864--4151Chr07:24516868..24516892 (25 bp)
CGCCGCTAAGTACCCAGAGATCGAG
LOC_Os07g40974
Os.12089.1.S1_at--208--91Chr07:24516568..24516592 (25 bp)
ATTCGTGAATTGCTTGACCTTATAC
LOC_Os07g40974
Os.12089.1.S1_at--35--3511Chr07:24516542..24516566 (25 bp)
CATGGGTATACCGTGTGTGTGTTCG
LOC_Os07g40974
Os.12089.1.S1_at--562--2591Chr07:24516503..24516527 (25 bp)
AACGACAAATTCGTTCTTGCTCGAA
LOC_Os07g40974
Os.12089.1.S1_at--182--7051Chr07:24516473..24516497 (25 bp)
GTAAACGCAGATCGATCCGAGATGT
LOC_Os07g40974
Os.12089.1.S1_at--806--7671Chr07:24516437..24516461 (25 bp)
GGGTTATAGTCATCATCAACGGATC
LOC_Os07g40974
Os.12089.1.S1_at--408--1931Chr07:24516419..24516443 (25 bp)
ACGGATCACAACTTTTGGACTGTTT
LOC_Os07g40974
Os.12089.1.S1_at--198--10191Chr07:24516389..24516413 (25 bp)
TATAGTCATCTCTGACAGGTCCGCA
LOC_Os07g40974
Os.12089.1.S1_at--489--2131Chr07:24516375..24516399 (25 bp)
ACAGGTCCGCACTTGTAACAGTTGA
LOC_Os07g40974
Os.12089.1.S1_at--760--6431Chr07:24516331..24516355 (25 bp)
GATCACCGACGAGGCATACATTATG
LOC_Os07g40974
Os.12089.1.S1_at--1109--8751Chr07:24516308..24516332 (25 bp)
TGTAGGTTATCATCCATCACGAATA
LOC_Os07g40974
Target Sequence 
CGCCGCTAAGTACCCAGAGATCGAGATCAAGCTCAAAGAGGTCATTGGGGAGGGGGTGAGGGTGCAAGCTGACACCAAGA
AGCTTGTAGATTTAGGGTTCAAGTATAAGTATGGGGTGGAGGAGACGCTGGATTGCAGTGTGGAATGCGCGAAGAGGTTG
GGAGAACTCTGATGTGATGATGTGTAGCAAAAATTCGTGAATTGCTTGACCTTATACACATGGGTATACCGTGTGTGTGT
TCGGTAAGAAACGAATGAACGACAAATTCGTTCTTGCTCGAATATTCGTAAACGCAGATCGATCCGAGATGTGAGGAAAT
GTTGGGTTATAGTCATCATCAACGGATCACAACTTTTGGACTGTTTTGAGATATAGTCATCTCTGACAGGTCCGCACTTG
TAACAGTTGATATTTTTCTTATTACTAGTGATCACCGACGAGGCATACATTATGTAGGTTATCATCCATCACGAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis