Browse Element(s) Details


Os.12125.1.S1_at

Description gb:AK064789.1
DB_XREF= gi:32974807
TID=Os.12125.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000C05, full insert sequence.
FL= gb:AK104813.1 gb:AK064789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5443011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein
LOC_Os04g54420Os.11291.1.S1_at11/114+32159641..32162964expressed protein
LOC_Os04g54430Os.12125.1.S1_at11/114+32164845..32168038expressed protein
LOC_Os04g54440Os.49165.1.S1_at11/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54440Os.49165.1.S2_at10/114+32169375..32173421RNA recognition motif family protein, expressed
LOC_Os04g54450Os.53253.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54450Os.26738.1.S1_at1/114+32175769..32180046retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54460OsAffx.26599.1.S1_at11/114+32182419..32182725hypothetical protein
LOC_Os04g54474Os.27178.1.S1_s_at11/114+32184292..32192973Transcription factor TGA4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12125.1.S1_at--681--7351Chr04:32165162..32165186 (25 bp)
GTGAATATCTTCATGCGGCTATAGT
LOC_Os04g54430
Os.12125.1.S1_at--1138--9611Chr04:32165152..32165176 (25 bp)
TCATGCGGCTATAGTTACCAACTTA
LOC_Os04g54430
Os.12125.1.S1_at--145--1711Chr04:32165136..32165160 (25 bp)
ACCAACTTACCATGCGCTGAGCTGT
LOC_Os04g54430
Os.12125.1.S1_at--523--4751Chr04:32165121..32165145 (25 bp)
GCTGAGCTGTGCTTGGTTTTCGTCA
LOC_Os04g54430
Os.12125.1.S1_at--854--8571Chr04:32165108..32165132 (25 bp)
TGGTTTTCGTCATGTTCTCGGAATC
LOC_Os04g54430
Os.12125.1.S1_at--474--9511Chr04:32165093..32165117 (25 bp)
TCTCGGAATCGAACTTGCATTAGGG
LOC_Os04g54430
Os.12125.1.S1_at--982--5491Chr04:32165062..32165086 (25 bp)
GAAAAAAGGGCTCCACACGTTCAGT
LOC_Os04g54430
Os.12125.1.S1_at--119--1091Chr04:32165056..32165080 (25 bp)
AGGGCTCCACACGTTCAGTAAGTGT
LOC_Os04g54430
Os.12125.1.S1_at--1078--6511Chr04:32165030..32165054 (25 bp)
GATTTGTAGGAGCTTTATGATTTCA
LOC_Os04g54430
Os.12125.1.S1_at--641--10631Chr04:32164933..32164957 (25 bp)
TTCGACCTGAATGGTGAAAGCCTGA
LOC_Os04g54430
Os.12125.1.S1_at--707--10391Chr04:32164889..32164913 (25 bp)
TTATTTTTACTTCTTTCATGCAACT
LOC_Os04g54430
Target Sequence 
GTGAATATCTTCATGCGGCTATAGTTACCAACTTACCATGCGCTGAGCTGTGCTTGGTTTTCGTCATGTTCTCGGAATCG
AACTTGCATTAGGGAGTTAAGAAAAAAGGGCTCCACACGTTCAGTAAGTGTGGATTTGTAGGAGCTTTATGATTTCAAGC
AATTAGACAGAACTCTGTTGTCATTGTTGCTTGCTTCTGTGGAGTTGAACAGATGTTTCGCTAACATAATTCGACCTGAA
TGGTGAAAGCCTGAAGATTGAATATGTCACAAGTTATTTTTACTTCTTTCATGCAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis