Browse Element(s) Details


Os.12127.2.S1_x_at

Description gb:AJ417528.1
DB_XREF= gi:37776920
TID=Os.12127.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000C21, full insert sequence
DEF=Oryza sativa partial mRNA for putative photosystem I chain V precursor (xd17 gene).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g303407/11Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os05g186701/11C4-dicarboxylate transporter/malic acid transport protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12127.2.S1_x_at--756--8071Chr09:18469032..18469056 (25 bp)
GGAGCAGAACGGCAAGACGCACTTC
LOC_Os09g30340
Os.12127.2.S1_x_at--213--1392Chr09:18469046..18469070 (25 bp)
AGACGCACTTCGACGCCGGCGACGA
LOC_Os09g30340
Os.12127.2.S1_x_at--919--9031Chr09:18469189..18469213 (25 bp)
TGCAGCAACGGATACAACCCAAACT
LOC_Os09g30340
Os.12127.2.S1_x_at--621--2611Chr09:18469204..18469228 (25 bp)
AACCCAAACTTCTTCTGATCATTCT
LOC_Os09g30340
Os.12127.2.S1_x_at--593--9471Chr09:18469217..18469241 (25 bp)
TCTGATCATTCTCATCTTGGATGGA
LOC_Os09g30340
Os.12127.2.S1_x_at--252--7971NONE
GGATCTCTGGTGTATCTACGTGATT
NONE
Os.12127.2.S1_x_at--563--2491Chr09:18469332..18469356 (25 bp)
AACAGTAGTGCAATCGCGTGTGTAT
LOC_Os09g30340
Os.12127.2.S1_x_at--887--531NONE
ATCGCGTGTGTATATTGGGCCGCAT
NONE
Os.12127.2.S1_x_at--867--8651NONE
TGGGCCGCATGAAATTTGTCAGTTA
NONE
Os.12127.2.S1_x_at--363--1311Chr09:18469383..18469406 (24 bp)
AGATGATCTTTCTCTATGCTCATGT
LOC_Os09g30340
Os.12127.2.S1_x_at--95--10131NONE
TATGCTCATGTTGTCAGTTACTTCA
NONE
Target Sequence 
GGAGCAGAACGGCAAGACGCACTTCGACGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCCTGCTCCGGTCCAACGACC
CCGTCGGCTTCAACCTCGTCGACGTCCTCGCCTGGGGCTCCCTCGGCCACATCGTCGCCTACTACATCCTCGCCACCTGC
AGCAACGGATACAACCCAAACTTCTTCTGATCATTCTCATCTTGGATGGATGCAATGTAATCTGAATGGATCTCTGGTGT
ATCTACGTGATTATGTATGAGATGGGTAAAAAAGAAAAGAAAAAAGGTTGATTAATTAGGAACAGTAGTGCAATCGCGTG
TGTATATTGGGCCGCATGAAATTTGTCAGTTAGATGATCTTTCTCTATGCTCATGTTGTCAGTTACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12127.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis