Browse Element(s) Details


Os.12129.1.S1_a_at

Description gb:AK065134.1
DB_XREF= gi:32975152
TID=Os.12129.1
CNT=138
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.12129 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence.
FL= gb:AK104947.1 gb:AK104684.1 gb:AK104103.1 gb:AK071580.1 gb:AK104525.1 gb:AK065134.1 gb:AY346466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5728011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57240Os.2240.1.S1_at11/112+35062109..35066743Voltage-gated potassium channel beta-1 subunit, putative, expressed
LOC_Os02g57250Os.4806.1.S1_at11/112+35067502..35069930Auxin-responsive protein IAA13, putative, expressed
LOC_Os02g57260Os.8733.1.S1_at11/112+35075010..350793303-ketoacyl-CoA thiolase 2, peroxisomal precursor, putative, expressed
LOC_Os02g57270Os.2449.1.S1_s_at11/112+35080221..35084790Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g57290Os.35294.1.S1_at11/112+35085325..35093422Cytochrome P450 family protein, expressed
LOC_Os02g57280Os.12129.1.S1_a_at11/112+35086471..35088446CBS domain containing protein, expressed
LOC_Os02g57300OsAffx.3092.1.S1_at11/112+35094388..35094906hypothetical protein
LOC_Os02g57310Os.53629.1.S1_x_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.35493.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.51470.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed
LOC_Os02g57310Os.53629.1.S1_at11/112+35107768..35112900Resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12129.1.S1_a_at--292--6651Chr02:35086982..35087006 (25 bp)
GTTGAGTGCCACTTTGAGACGGTCT
LOC_Os02g57280
Os.12129.1.S1_a_at--348--3971Chr02:35087001..35087025 (25 bp)
CGGTCTCAGGTCTCCCAGTTATAGA
LOC_Os02g57280
Os.12129.1.S1_a_at--716--291Chr02:35087021..35087045 (25 bp)
ATAGATGCCAGCCTCAGATGTGTTG
LOC_Os02g57280
Os.12129.1.S1_a_at--102--8451Chr02:35087068..35087200 (25 bp)
GGCCAGGGCTTCTCATGGGTCAAAG
LOC_Os02g57280
Os.12129.1.S1_a_at--731--6591Chr02:35087206..35087230 (25 bp)
GATTGCAGAAGTGATGACCTCTCCA
LOC_Os02g57280
Os.12129.1.S1_a_at--813--831Chr02:35087354..35087375 (22 bp)
ATGGATGCGGCAGCTCTGATGCTAA
LOC_Os02g57280
Os.12129.1.S1_a_at--319--9111Chr02:35087572..35087596 (25 bp)
TGCTGACGTTCTTCGCGAGTTGGAA
LOC_Os02g57280
Os.12129.1.S1_a_at--1154--5391Chr02:35087594..35087618 (25 bp)
GAAGCCCTGCTGGAGGTTTAGACGT
LOC_Os02g57280
Os.12129.1.S1_a_at--627--1391Chr02:35087613..35087637 (25 bp)
AGACGTGCAGTGGTCCATATGCTTC
LOC_Os02g57280
Os.12129.1.S1_a_at--772--631Chr02:35087631..35087655 (25 bp)
ATGCTTCGGCCTTGTTGTATATATG
LOC_Os02g57280
Os.12129.1.S1_a_at--625--7411Chr02:35087707..35087731 (25 bp)
GTGTTGTAGCGCGAATCACCAAGAT
LOC_Os02g57280
Target Sequence 
GTTGAGTGCCACTTTGAGACGGTCTCAGGTCTCCCAGTTATAGATGCCAGCCTCAGATGTGTTGGAGTGATCGTCAAGAG
TGACCGGGCCAGGGCTTCTCATGGGTCAAAGACGAAGATTGCAGAAGTGATGACCTCTCCAGCCATCACTCTACCATCTG
ACAAAACAGTAATGGATGCGGCAGCTCTGATGCTAAAGAAGAAGGATCCACAGATTACCAATTGTAAATCAGGACAGACA
AGTGATAGGTATAGTTACCCGTGCTGACGTTCTTCGCGAGTTGGAAGCCCTGCTGGAGGTTTAGACGTGCAGTGGTCCAT
ATGCTTCGGCCTTGTTGTATATATGTAAATATATGCCATGGTGTTTTTGAATAGCAGGCATCTCTAATCTGTAAGAGTGT
TGTAGCGCGAATCACCAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12129.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis