Browse Element(s) Details


Os.12135.1.S1_at

Description gb:CB675710
DB_XREF= gi:29679435
DB_XREF=OSJNEe11J18.r
CLONE=OSJNEe11J18
TID=Os.12135.1
CNT=20
FEA=EST
TIER=Stack
STK=9
UG=Os.12135 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_182126.1 (A.thaliana) putative SNF2 subfamily transcriptional activator (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0229011/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02250Os.6160.1.S1_at11/112+726578..734044expressed protein
LOC_Os02g02260OsAffx.11864.1.S1_at11/112+738922..739370hypothetical protein
LOC_Os02g02270Os.4816.1.S1_at8/112+743352..745314expressed protein
LOC_Os02g02290Os.12135.1.S1_at11/112+748714..759273SNF2 family N-terminal domain containing protein, expressed
LOC_Os02g02310NANA2+763409..765023nodulin MtN21 family protein, putative, expressed
LOC_Os02g02320Os.23156.1.S1_at11/112+767270..772120Serine carboxypeptidase III precursor, putative, expressed
LOC_Os02g02330NANA2+774907..775182hypothetical protein
LOC_Os02g02340Os.10244.1.S1_s_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.24066.1.S1_x_at11/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02340OsAffx.3584.1.S1_x_at1/112+775643..778322Acyltransferase family protein, expressed
LOC_Os02g02350Os.14099.1.S1_a_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50684.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50679.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50682.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50680.1.S1_at11/112+780684..785676Kelch motif family protein, expressed
LOC_Os02g02350Os.50681.1.S1_x_at11/112+780684..785676Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0016585cellular_componentchromatin remodeling complex
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12135.1.S1_at--324--7711Chr02:749227..749251 (25 bp)
GGGTGCTCATTCTGTGCAGCAATCT
LOC_Os02g02290
Os.12135.1.S1_at--580--10531Chr02:749188..749212 (25 bp)
TTCATCACCCGGCATTGGAGACATC
LOC_Os02g02290
Os.12135.1.S1_at--810--6131Chr02:749088..749112 (25 bp)
GAGGGATTGTTATTCTTGGCATTGC
LOC_Os02g02290
Os.12135.1.S1_at--334--8291Chr02:749071..749095 (25 bp)
GGCATTGCGGTGTACATTCCTTAGC
LOC_Os02g02290
Os.12135.1.S1_at--258--10751Chr02:749042..749066 (25 bp)
TTGAATCTTGATTGACCTCTCTACC
LOC_Os02g02290
Os.12135.1.S1_at--846--11Chr02:748997..749021 (25 bp)
ATTGGCCTGGTTTTGACACCCATTT
LOC_Os02g02290
Os.12135.1.S1_at--476--91Chr02:748962..748986 (25 bp)
ATTCCTGCCATCCTTCAAAGAAGTT
LOC_Os02g02290
Os.12135.1.S1_at--293--10411Chr02:748939..748963 (25 bp)
TTATCACGACCGTCTGGGACTGACT
LOC_Os02g02290
Os.12135.1.S1_at--865--3052Chr07:3835466..3835485 (20 bp)
AATCTTGTTCTCTGTTGACTGTTAA
NONE
Os.12135.1.S1_at--340--8951Chr02:748814..748838 (25 bp)
TGACTGTTAAGTAGCGCTCCATCCA
LOC_Os02g02290
Os.12135.1.S1_at--1069--772Chr09:15124898..15125095 (25 bp)
ATGTGATGGCGATCTCATGTCATGA
NONE
Target Sequence 
GGGTGCTCATTCTGTGCAGCAATCTGATCGTGGGGGGAGTTCATCACCCGGCATTGGAGACATCCAGTGGGCTAAACCTA
CCAAGAGATCGAGGACTGATAGTGGCAAAAGACGGCCAAGCCATATGTGAAAAAGAAAAGAGGGATTGTTATTCTTGGCA
TTGCGGTGTACATTCCTTAGCACCCTTGAATCTTGATTGACCTCTCTACCCGCTGCTGATTCTGGAGCCCATTGGCCTGG
TTTTGACACCCATTTCTTCGTCGCCATTCCTGCCATCCTTCAAAGAAGTTATCACGACCGTCTGGGACTGACTTGTGTTG
TCATGGACATTGTGGGAAATGTGGGTAGGAGTAATCGTTCTTGTATGTTGGTATTTTCTGTAAAGGGCAAACACATTTAA
TCTTGTTCTCTGTTGACTGTTAAGTAGCGCTCCATCCAACTGGAGATGTGATGGCGATCTCATGTCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis