Browse Element(s) Details


Os.12155.1.S1_at

Description gb:AK121220.1
DB_XREF= gi:37990843
TID=Os.12155.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.28 (P0458E05.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090H02, full insert sequence.
FL= gb:AK121220.1 gb:AK105062.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2497011/11Small nuclear ribonucleoprotein Sm D2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g24910Os.27639.1.S1_x_at3/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24910Os.53731.1.S1_at1/115+14343843..14348716retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g24920OsAffx.8980.1.S1_at1/115+14348794..14349519transposon protein, putative, unclassified
LOC_Os05g24930OsAffx.4419.1.S1_at9/115+14350302..14354320pentatricopeptide, putative, expressed
LOC_Os05g24940OsAffx.14817.1.S1_at9/115+14354509..14355449hypothetical protein
LOC_Os05g24950Os.46995.1.S1_x_at1/115+14358552..14361480retrotransposon protein, putative, unclassified
LOC_Os05g24960NANA5+14362435..14364929retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g24970Os.12155.1.S1_at11/115+14371563..14374099Small nuclear ribonucleoprotein Sm D2, putative, expressed
LOC_Os05g24980OsAffx.4420.1.S1_at10/115+14381067..14382221hypothetical protein
LOC_Os05g24990OsAffx.27005.1.S1_at11/115+14382551..14386008transposon protein, putative, Mutator sub-class
LOC_Os05g24990OsAffx.23660.1.S1_at1/115+14382551..14386008transposon protein, putative, Mutator sub-class
LOC_Os05g25000NANA5+14389780..14391056hypothetical protein
LOC_Os05g25010Os.10827.1.S1_x_at10/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010Os.46055.2.S1_x_at5/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.2.S1_x_at3/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_x_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.1.S1_at2/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g25010OsAffx.21182.3.S1_at1/115+14395439..14402199transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12155.1.S1_at--793--3471Chr05:14372143..14372166 (24 bp)
CAGGTGCTTATCAATTGCCGGAACA
LOC_Os05g24970
Os.12155.1.S1_at--795--3611Chr05:14372107..14372131 (25 bp)
CTTGGTCGTGTGAGGGCATTTGATC
LOC_Os05g24970
Os.12155.1.S1_at--364--6731Chr05:14371896..14371920 (25 bp)
GTTCATTAGCAAGATGTTCCTACGT
LOC_Os05g24970
Os.12155.1.S1_at--982--9591Chr05:14371861..14371885 (25 bp)
TCATCATTGTGCTCAGGAACCCGAA
LOC_Os05g24970
Os.12155.1.S1_at--102--10151Chr05:14371818..14371842 (25 bp)
TATCCAGGATTGTCTCTTTGCTACG
LOC_Os05g24970
Os.12155.1.S1_at--580--4851Chr05:14371799..14371823 (25 bp)
GCTACGTCGCTCTTAGTAATGTCCA
LOC_Os05g24970
Os.12155.1.S1_at--52--2611Chr05:14371774..14371798 (25 bp)
AACGCCTTTGGCTAAGATTGACCAG
LOC_Os05g24970
Os.12155.1.S1_at--930--5451Chr05:14371697..14371721 (25 bp)
GAACGTCTCTTGTATCTAAGTTGCA
LOC_Os05g24970
Os.12155.1.S1_at--209--5611Chr05:14371633..14371657 (25 bp)
GACAATTTGGAACTGCACTGCTTCT
LOC_Os05g24970
Os.12155.1.S1_at--84--1991Chr05:14371617..14371641 (25 bp)
ACTGCTTCTGTTTCGTGTTGATTTC
LOC_Os05g24970
Os.12155.1.S1_at--882--9411Chr05:14371605..14371629 (25 bp)
TCGTGTTGATTTCTCACTTTCTGAA
LOC_Os05g24970
Target Sequence 
CAGGTGCTTATCAATTGCCGGAACAACAAGAAGTTGCTTGGTCGTGTGAGGGCATTTGATCGCCATTGCAACATGGTTCT
TGAGAATGTTAGGGAGATGTGGACTGAGGTACCAAAGACTGGTAAAGGCAAGAAGAAGGCTCTTCCAGTGAACAAGGACA
GGTTCATTAGCAAGATGTTCCTACGTGGGGATTCGGTCATCATTGTGCTCAGGAACCCGAAATGAGTTATATGGTCTTGT
ATCCAGGATTGTCTCTTTGCTACGTCGCTCTTAGTAATGTCCAAACGCCTTTGGCTAAGATTGACCAGAATCAGCTATAT
TTGATGGTTCAGTGTTGTAGTTGGAGTTGTTATGGATTATGAACGTCTCTTGTATCTAAGTTGCATCGTTAGCATCTGTT
TGAATCATCAATATATTAGCTGAAGACAATTTGGAACTGCACTGCTTCTGTTTCGTGTTGATTTCTCACTTTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis