Browse Element(s) Details


Os.12162.1.S1_at

Description gb:NM_197856.1
DB_XREF= gi:37537071
TID=Os.12162.1
CNT=24
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12162 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative carnitineacylcarnitine translocase (OSJNBa0003O19.7), mRNA.
PROD=putative carnitineacylcarnitine translocase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4229911/11Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42240Os.7866.1.S1_at11/1110+22420567..22423416carbohydrate kinase, putative, expressed
LOC_Os10g42250Os.20189.1.S1_at10/1110+22424448..22426914expressed protein
LOC_Os10g42260OsAffx.20125.1.S1_at11/1110+22427620..22428470hypothetical protein
LOC_Os10g42270OsAffx.7899.1.S1_at10/1110+22429235..22431421hypothetical protein
LOC_Os10g42280Os.46585.1.S1_at11/1110+22436642..22437730Bet v I allergen family protein, putative, expressed
LOC_Os10g42299Os.2759.1.S1_s_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42299Os.12162.1.S1_at11/1110+22445266..22450442Mitochondrial carnitine/acylcarnitine carrier, putative, expressed
LOC_Os10g42320Os.12732.2.S1_x_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_a_at11/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42320Os.12732.1.S1_at10/1110+22452239..22454692NMD3 family protein, expressed
LOC_Os10g42340OsAffx.6945.1.S1_at11/1110+22459247..22463635expressed protein
LOC_Os10g42364OsAffx.22848.4.S1_x_at3/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42364OsAffx.22848.4.S1_at2/1110+22474739..22480696retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12162.1.S1_at--619--9211Chr10:22448126..22448150 (25 bp)
TCCAATGGCCATTTCTATCTCTTAT
LOC_Os10g42299
Os.12162.1.S1_at--1057--6951Chr10:22448049..22448073 (25 bp)
GTAGCAGTTCCAATCCTGTTTTGCA
LOC_Os10g42299
Os.12162.1.S1_at--1023--1631Chr10:22447968..22447992 (25 bp)
AGCGAGCAAGATCGCTGGCTCTGCA
LOC_Os10g42299
Os.12162.1.S1_at--258--3851Chr10:22447948..22447972 (25 bp)
CTGCATTTTTTGTCTGCCTGTATGT
LOC_Os10g42299
Os.12162.1.S1_at--727--4731Chr10:22447873..22447897 (25 bp)
GCTGAAAGAAACTCGTCGTCTTGTC
LOC_Os10g42299
Os.12162.1.S1_at--335--9411Chr10:22447858..22447882 (25 bp)
TCGTCTTGTCGGAATGGTTGGCCTG
LOC_Os10g42299
Os.12162.1.S1_at--678--471Chr10:22447820..22447844 (25 bp)
ATCTGACGGCGATCCCATGGTGAGG
LOC_Os10g42299
Os.12162.1.S1_at--915--1111Chr10:22447789..22447813 (25 bp)
AGTGATGCTGTCTGTGATGGCGATT
LOC_Os10g42299
Os.12162.1.S1_at--1035--9491Chr10:22447694..22447718 (25 bp)
TCTCCTCTTCTTCTTGGTCTGAATT
LOC_Os10g42299
Os.12162.1.S1_at--993--10351Chr10:22447669..22447693 (25 bp)
TTTTTGATTCCCTCTCAACTAGCAT
LOC_Os10g42299
Os.12162.1.S1_at--180--4391Chr10:22447624..22447648 (25 bp)
GCCACAGCCCTTGTATTTTAGTACT
LOC_Os10g42299
Target Sequence 
TCCAATGGCCATTTCTATCTCTTATCATGGTTGAAACAACAACCAGGCTGTGCAGTTGAGGGGGGGAAAAAGCAGCAGTA
GCAGTTCCAATCCTGTTTTGCAAGTTTATTTCATCTGCAACATTGTGATTCAAAACATTGAAGTATGGAAGATGCAACAG
CGAGCAAGATCGCTGGCTCTGCATTTTTTGTCTGCCTGTATGTATAATAATATAAGCCTAACATGTGTGGGGTGTGGGTG
TGGAGTGAGTGTAGCTGAAAGAAACTCGTCGTCTTGTCGGAATGGTTGGCCTGGAGTGGATTGGCCATCTGACGGCGATC
CCATGGTGAGGGGAGTGAGTGATGCTGTCTGTGATGGCGATTGGGGGTGCGTTTGGTGAGTGAGTGAGTGAGTGGCCCTG
GTGTTGCTTGCCCTCTTGGCATCCGAATCACCTCTCCTCTTCTTCTTGGTCTGAATTTTTTTGATTCCCTCTCAACTAGC
ATCTTTTTAATTGGCTGCTATTGCCACAGCCCTTGTATTTTAGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis