Browse Element(s) Details


Os.12165.1.S1_at

Description gb:AU100738
DB_XREF= gi:9864988
DB_XREF=AU100738
CLONE=C12491
TID=Os.12165.1
CNT=11
FEA=EST
TIER=Stack
STK=7
UG=Os.12165 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:S71242 (A.thaliana) S71242 3-phosphoadenosine 5-phosphosulfate reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3257011/115'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32530Os.19000.1.S1_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32530OsAffx.16526.1.S1_x_at11/117+19376745..19384444Potassium transporter 7, putative, expressed
LOC_Os07g32540OsAffx.28713.1.S1_x_at11/117+19391682..19391900hypothetical protein
LOC_Os07g32550Os.57120.1.S1_at11/117+19401828..19403438dimethyladenosine transferase, putative, expressed
LOC_Os07g32560OsAffx.5501.1.S1_at11/117+19404167..19405305ATP-dependent protease La domain containing protein, expressed
LOC_Os07g32570Os.19519.1.S1_s_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570OsAffx.28714.1.S1_x_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32570Os.12165.1.S1_at11/117+19408263..194115585'-adenylylsulfate reductase 2, chloroplast precursor, putative, expressed
LOC_Os07g32580OsAffx.22940.5.S1_at11/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.5.S1_x_at10/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.3.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580Os.35344.18.S1_x_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.1.S1_s_at8/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32580OsAffx.22940.2.S1_s_at3/117+19418606..19425402Transposable element protein, putative, MuDR
LOC_Os07g32590Os.18234.1.S1_at11/117+19426230..19430540methionine aminopeptidase, type I family protein, expressed
LOC_Os07g32600Os.49200.2.S1_at11/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os07g32600Os.49200.1.S1_at10/117+19435205..19441055Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0019379biological_processsulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)
GO:0019421biological_processsulfate reduction, APS pathway
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004604molecular_functionphosphoadenylyl-sulfate reductase (thioredoxin) activity
GO:0009973molecular_functionadenylyl-sulfate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12165.1.S1_at--797--2471Chr07:19408585..19408609 (25 bp)
AACAGCCTCCGATGAGGGAGAGACC
LOC_Os07g32570
Os.12165.1.S1_at--663--1071Chr07:19408571..19408595 (25 bp)
AGGGAGAGACCCGATCGGCACAGCC
LOC_Os07g32570
Os.12165.1.S1_at--473--9451Chr07:19408557..19408581 (25 bp)
TCGGCACAGCCATCATTTGTTCTTG
LOC_Os07g32570
Os.12165.1.S1_at--920--10251Chr07:19408542..19408566 (25 bp)
TTTGTTCTTGGCATCCAATGGCAAT
LOC_Os07g32570
Os.12165.1.S1_at--473--10871Chr07:19408535..19408559 (25 bp)
TTGGCATCCAATGGCAATCGACTTG
LOC_Os07g32570
Os.12165.1.S1_at--360--851Chr07:19408525..19408549 (25 bp)
ATGGCAATCGACTTGGCGACGACCA
LOC_Os07g32570
Os.12165.1.S1_at--85--5691Chr07:19408516..19408540 (25 bp)
GACTTGGCGACGACCATGATCCGGT
LOC_Os07g32570
Os.12165.1.S1_at--301--4591Chr07:19408510..19408534 (25 bp)
GCGACGACCATGATCCGGTGTATTA
LOC_Os07g32570
Os.12165.1.S1_at--626--9751Chr07:19408337..19408361 (25 bp)
TAATTTGGGTCGTCGTGTGTACTTG
LOC_Os07g32570
Os.12165.1.S1_at--474--7691Chr07:19408331..19408355 (25 bp)
GGGTCGTCGTGTGTACTTGTAGCTA
LOC_Os07g32570
Os.12165.1.S1_at--986--4011Chr07:19408327..19408351 (25 bp)
CGTCGTGTGTACTTGTAGCTAGTAA
LOC_Os07g32570
Target Sequence 
AACAGCCTCCGATGAGGGAGAGACCCGATCGGCACAGCCATCATTTGTTCTTGGCATCCAATGGCAATCGACTTGGCGAC
GACCATGATCCGGTGTATTAGTATTAGGGTGAGATGGGTTAAGTTGGGAATCGGGGAGGTCAGAGGAAGGGGTCGGGGTC
AGGGTTCAGATGCAGTTGCTGCATCTATAGCTTTTGCTGCTACTGCGGGTTAATCCTGGAAAGCTTCTCTTCTTTCGGAG
GAAGAGGGTAATTTGGGTCGTCGTGTGTACTTGTAGCTAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis