Browse Element(s) Details


Os.12174.1.S1_at

Description gb:AK061362.1
DB_XREF= gi:32971380
TID=Os.12174.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C01, full insert sequence.
FL= gb:AK066507.1 gb:AK059745.1 gb:AK104405.1 gb:AK061362.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0676011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06730Os.51341.1.S1_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730Os.51341.1.S1_x_at11/1111+3284397..3284973expressed protein
LOC_Os11g06730OsAffx.31339.1.S1_s_at1/1111+3284397..3284973expressed protein
LOC_Os11g06740OsAffx.7024.1.S1_at10/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06740Os.48459.1.A1_at5/1111+3286717..3289455SNELIPTRC, putative, expressed
LOC_Os11g06750Os.22696.1.S1_at11/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06750Os.22696.2.S1_x_at9/1111+3290058..329292760S ribosomal protein L3, putative, expressed
LOC_Os11g06760Os.12174.1.S1_at11/1111+3293877..3299232expressed protein
LOC_Os11g06770OsAffx.7025.1.S1_at11/1111+3303434..3305854AP2 domain containing protein, expressed
LOC_Os11g06780Os.51809.1.S1_at10/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06780Os.46117.1.S1_at1/1111+3309986..3312193Protein kinase domain containing protein, expressed
LOC_Os11g06790Os.46500.1.S1_at5/1111+3323505..3324213transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12174.1.S1_at--1011--8031Chr11:3298319..3298343 (25 bp)
GGAGATTATTACAACTACAGAGGCA
LOC_Os11g06760
Os.12174.1.S1_at--734--4231Chr11:3298658..3298682 (25 bp)
CCGTGGGCGTGGTCGATTCTAAGAT
LOC_Os11g06760
Os.12174.1.S1_at--52--8031Chr11:3298693..3298717 (25 bp)
GGAGGTGCCCTTGAAGCTTGAGAAC
LOC_Os11g06760
Os.12174.1.S1_at--1144--4911Chr11:3298708..3298732 (25 bp)
GCTTGAGAACTCGTGTGCTTAAATT
LOC_Os11g06760
Os.12174.1.S1_at--835--471Chr11:3298733..3298757 (25 bp)
ATCTGATAATGCTGTTCTGTATGGG
LOC_Os11g06760
Os.12174.1.S1_at--513--10231Chr11:3298760..3298784 (25 bp)
TTTCGACATGAATCCGTATGCCCCA
LOC_Os11g06760
Os.12174.1.S1_at--1128--10091Chr11:3298789..3298813 (25 bp)
TATGTTTTTACTTCCCGTGGCGGTG
LOC_Os11g06760
Os.12174.1.S1_at--462--4671Chr11:3298808..3298832 (25 bp)
GCGGTGTGACTGATTGGGCAAATTT
LOC_Os11g06760
Os.12174.1.S1_at--858--3131Chr11:3298828..3298852 (25 bp)
AATTTTGTGGCTGGATCTTGGTTTT
LOC_Os11g06760
Os.12174.1.S1_at--114--9591Chr11:3298843..3298867 (25 bp)
TCTTGGTTTTGTAGCTAGGCCTGTC
LOC_Os11g06760
Os.12174.1.S1_at--270--891Chr11:3298859..3298883 (25 bp)
AGGCCTGTCCTGTCAGCAAAAGCAA
LOC_Os11g06760
Target Sequence 
GGAGATTATTACAACTACAGAGGCAGAGGGAGAGGCCGATTTAGAGGACGAGGACGTGGAAGAGGCCGTGGTGGCTACTA
CGGAGGTGGTCGACGTGGTGGATATGGCTATGATTACGGTTATGGCGGCAGGGGGGACTATTATGAAGATCAGGGCGAAT
ACTTTGAAGAACCAGAGGACTANCCCCCCTCCAGGCCGTGGACGTGGCAGGGGAAGAAGGGGCGGAGGACCGGGACCATT
CCGTGGTCGCGGCCGTGGGCGTGGTCGATTCTAAGATGAAATCAGGAGGAGGTGCCCTTGAAGCTTGAGAACTCGTGTGC
TTAAATTATCTGATAATGCTGTTCTGTATGGGGGTTTTCGACATGAATCCGTATGCCCCATCAGTATGTTTTTACTTCCC
GTGGCGGTGTGACTGATTGGGCAAATTTTGTGGCTGGATCTTGGTTTTGTAGCTAGGCCTGTCCTGTCAGCAAAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis