Browse Element(s) Details


Os.12178.1.S1_at

Description gb:CB682356
DB_XREF= gi:29686081
DB_XREF=OSJNEf09J10.f
CLONE=OSJNEf09J10
TID=Os.12178.1
CNT=74
FEA=FLmRNA
TIER=Stack
STK=19
UG=Os.12178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-C11, full insert sequence
FL= gb:AK121481.1 gb:AK063850.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5229011/11Peptidylprolyl isomerase FKBP12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52240OsAffx.12608.1.S1_at11/112+31987873..31988925hypothetical protein
LOC_Os02g52250Os.19400.1.S1_at11/112+31989349..31991827SKIP/SNW domain containing protein, expressed
LOC_Os02g52260Os.9818.1.S1_at11/112+31993358..31995386expressed protein
LOC_Os02g52270OsAffx.24831.1.S1_s_at11/112+31995777..31997987Chaperone protein dnaJ, putative, expressed
LOC_Os02g52280Os.25104.1.S1_x_at11/112+32002145..32011145expressed protein
LOC_Os02g52280Os.25104.2.S1_at10/112+32002145..32011145expressed protein
LOC_Os02g52290Os.12178.1.S1_at11/112+32011864..32013982Peptidylprolyl isomerase FKBP12, putative, expressed
LOC_Os02g52300Os.26718.1.S1_at11/112+32015703..32017260expressed protein
LOC_Os02g52314Os.51499.1.S1_at11/112+32017453..32021281ER6 protein, putative, expressed
LOC_Os02g52330OsAffx.3045.1.S1_at11/112+32023652..32027083hypothetical protein
LOC_Os02g52330Os.7307.3.S1_x_at3/112+32023652..32027083hypothetical protein
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12178.1.S1_at--58--891Chr02:32013176..32013200 (25 bp)
AGGCCAGGAGCCATTCAGTTTCAAT
LOC_Os02g52290
Os.12178.1.S1_at--937--271Chr02:32013151..32013175 (25 bp)
ATAGGCCAGGGTTCGGTGATCAAAG
LOC_Os02g52290
Os.12178.1.S1_at--20--5351Chr02:32012178..32012522 (25 bp)
GAAGTTGCTCGTATTCAGTGCACCC
LOC_Os02g52290
Os.12178.1.S1_at--1152--7331Chr02:32012161..32012185 (25 bp)
GTGCACCCCGGATTATGCGTATGGA
LOC_Os02g52290
Os.12178.1.S1_at--677--10091Chr02:32012142..32012166 (25 bp)
TATGGAGCTAGTGGGTTTCCGGCCT
LOC_Os02g52290
Os.12178.1.S1_at--660--7611Chr02:32012116..32012140 (25 bp)
GGGAATTCGACCAAACTCAGTGCTG
LOC_Os02g52290
Os.12178.1.S1_at--866--6011Chr02:32012085..32012109 (25 bp)
GAGATTGAGGTTCTTAGCGCCCAGT
LOC_Os02g52290
Os.12178.1.S1_at--626--10451Chr02:32012072..32012096 (25 bp)
TTAGCGCCCAGTAAACGCATCATGT
LOC_Os02g52290
Os.12178.1.S1_at--187--51Chr02:32012008..32012032 (25 bp)
ATTGTAACGTCACAACACTGCTGCG
LOC_Os02g52290
Os.12178.1.S1_at--850--4851Chr02:32011982..32012006 (25 bp)
GCTACCGCTGGAATGTTCTATGTTA
LOC_Os02g52290
Os.12178.1.S1_at--766--7031Chr02:32011949..32011973 (25 bp)
GTAACGTTACACCATCGTCTATGGA
LOC_Os02g52290
Target Sequence 
AGGCCAGGAGCCATTCAGTTTCAATATAGGCCAGGGTTCGGTGATCAAAGGATGGGACGAGGGAGTTATGACCATGCAAG
TGGGTGAAGTTGCTCGTATTCAGTGCACCCCGGATTATGCGTATGGAGCTAGTGGGTTTCCGGCCTGGGGAATTCGACCA
AACTCAGTGCTGGTGTTCGAGATTGAGGTTCTTAGCGCCCAGTAAACGCATCATGTAATTCCGGATGGATCTAAAATTCC
ATGAGTACTGAAATAATTGTAACGTCACAACACTGCTGCGNGCTACCGCTGGAATGTTCTATGTTATTGACCAAGTAACG
TTACACCATCGTCTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis