Browse Element(s) Details


Os.12229.1.S1_at

Description gb:AK064108.1
DB_XREF= gi:32974126
TID=Os.12229.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12229 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F08, full insert sequence.
FL= gb:AK064108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3227011/11ribosomal protein S16 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g32220Os.12103.1.S1_at9/119+19234783..19238291Protein pob, putative, expressed
LOC_Os09g32230Os.53462.1.S1_at11/119+19238835..19240324Papain family cysteine protease containing protein, expressed
LOC_Os09g32240Os.8791.1.S1_at11/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32240OsAffx.16011.1.S1_at1/119+19240606..19244000lipid-binding serum glycoprotein family protein, putative, expressed
LOC_Os09g32250Os.6203.1.S1_at11/119+19244513..19249906DNA repair ATPase, putative, expressed
LOC_Os09g32260Os.54203.1.S1_at10/119+19252877..19255544No apical meristem protein, expressed
LOC_Os09g32270Os.9485.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270Os.12229.1.S1_at11/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32270OsAffx.30114.1.S1_s_at10/119+19263096..19267132ribosomal protein S16 containing protein, expressed
LOC_Os09g32280NANA9+19268294..19270022Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os09g32290Os.5601.1.S1_at11/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32290OsAffx.23323.1.S1_x_at1/119+19271921..19272860Sarcosine oxidase, putative, expressed
LOC_Os09g32300Os.15552.2.S1_x_at10/119+19279445..19285633KH domain containing protein, expressed
LOC_Os09g32310Os.53700.1.S1_at9/119+19286465..19289476expressed protein
LOC_Os09g32310OsAffx.6468.1.S1_x_at4/119+19286465..19289476expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12229.1.S1_at--942--6111Chr09:19266991..19267015 (25 bp)
GAGTGATGCTGCAGTAGGTCTCCAC
LOC_Os09g32270
Os.12229.1.S1_at--1059--8851Chr09:19266994..19267018 (25 bp)
TGATGCTGCAGTAGGTCTCCACTTG
LOC_Os09g32270
Os.12229.1.S1_at--414--9111Chr09:19266997..19267021 (25 bp)
TGCTGCAGTAGGTCTCCACTTGTTT
LOC_Os09g32270
Os.12229.1.S1_at--83--6471Chr09:19267033..19267057 (25 bp)
GATAAGATCATGAGTACTGTACAAT
LOC_Os09g32270
Os.12229.1.S1_at--244--6971Chr09:19267046..19267070 (25 bp)
GTACTGTACAATATGGAAACTTCCT
LOC_Os09g32270
Os.12229.1.S1_at--1072--2211Chr09:19267062..19267086 (25 bp)
AAACTTCCTAATCATGTAATCTTCC
LOC_Os09g32270
Os.12229.1.S1_at--840--3071Chr09:19267071..19267095 (25 bp)
AATCATGTAATCTTCCATTGTTTTC
LOC_Os09g32270
Os.12229.1.S1_at--313--10551Chr09:19267083..19267107 (25 bp)
TTCCATTGTTTTCTAATAATTTACA
LOC_Os09g32270
Os.12229.1.S1_at--101--3131Chr09:19267100..19267124 (25 bp)
AATTTACAAGGTCGTAGTGCTGCAC
LOC_Os09g32270
Os.12229.1.S1_at--76--10491Chr09:19267103..19267127 (25 bp)
TTACAAGGTCGTAGTGCTGCACTAT
LOC_Os09g32270
Os.12229.1.S1_at--236--1031Chr09:19267108..19267132 (25 bp)
AGGTCGTAGTGCTGCACTATGAGTT
LOC_Os09g32270
Target Sequence 
GAGTGATGCTGCAGTAGGTCTCCACTTGTTTNGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCC
TAATCATGTAATCTTCCATTGTTTTCTAATAATTTACAAGGTCGTAGTGCTGCACTATGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12229.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis