Browse Element(s) Details


Os.12233.2.S1_x_at

Description gb:NM_186757.1
DB_XREF= gi:34900599
GEN=P0565A07.33
TID=Os.12233.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12233 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative GTP-binding protein GTP6 (P0565A07.33), mRNA.
PROD=putative GTP-binding protein GTP6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g135309/11Ras-related protein ARA-3, putative, expressed
LOC_Os07g096801/11Ras-related protein ARA-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13460Os.10093.2.S1_at11/117+7711755..7718975expressed protein
LOC_Os07g13460Os.10093.3.S1_x_at11/117+7711755..7718975expressed protein
LOC_Os07g13470Os.31993.2.S1_x_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470Os.31993.1.S1_at11/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13470OsAffx.198.1.S1_at1/117+7719484..7722117calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g13480OsAffx.22417.1.S1_at11/117+7722358..7723450hypothetical protein
LOC_Os07g13490OsAffx.10193.1.S1_at10/117+7727531..7730122hypothetical protein
LOC_Os07g13500OsAffx.28430.1.S1_at11/117+7731146..7731562hypothetical protein
LOC_Os07g13510NANA7+7735670..7735963hypothetical protein
LOC_Os07g13520Os.28865.1.S1_at11/117+7737420..7740465expressed protein
LOC_Os07g13530Os.12233.1.S1_a_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.1.S1_at11/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13530Os.12233.2.S1_x_at9/117+7741273..7745079Ras-related protein ARA-3, putative, expressed
LOC_Os07g13540Os.32620.1.S1_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13540Os.32620.2.S1_x_at11/117+7752251..7756183pentatricopeptide, putative, expressed
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009873biological_processethylene mediated signaling pathway
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12233.2.S1_x_at--40--9611NONE
TCATCGGCGACAGCGTTGGGAAAAG
NONE
Os.12233.2.S1_x_at--563--4631NONE
GCGTTGGGAAAAGTTGTCTCCTCCT
NONE
Os.12233.2.S1_x_at--288--6251Chr07:7743026..7743050 (25 bp)
GATGGTTCCTTCACCACCAGTTTTA
LOC_Os07g13530
Os.12233.2.S1_x_at--114--1731Chr07:7743015..7743035 (21 bp)
ACCAGTTTTATTACCACCATCATTG
LOC_Os07g13530
Os.12233.2.S1_x_at--377--1592Chr07:7742819..7742843 (25 bp)
AGCTGGTCAAGAACGTTTCCGAACT
LOC_Os07g13530
Os.12233.2.S1_x_at--355--5951Chr07:7742521..7742545 (25 bp)
GAGCAACATGCTTCCGATAATGTGA
LOC_Os07g13530
Os.12233.2.S1_x_at--823--7831Chr07:7742486..7742510 (25 bp)
GGTAGGCAACAAAGCTGACATGGAT
LOC_Os07g13530
Os.12233.2.S1_x_at--762--5931Chr07:7741887..7741911 (25 bp)
GAGCAGGTTTTCTTTTCAATAGCAA
LOC_Os07g13530
Os.12233.2.S1_x_at--1140--2331Chr07:7741850..7741874 (25 bp)
AAAGACTTGCGGAGACTGATTCCAA
LOC_Os07g13530
Os.12233.2.S1_x_at--981--6571Chr07:7741755..7741857 (25 bp)
GATTCCAAGACTGAGGATCGCACGA
LOC_Os07g13530
Os.12233.2.S1_x_at--827--1331Chr07:7741714..7741738 (25 bp)
AGAGGGTGATGCTGAGGCCACAACT
LOC_Os07g13530
Target Sequence 
TCATCGGCGACAGCGTTGGGAAAAGTTGTCTCCTCCTACGGTTCTCTGATGGTTCCTTCACCACCAGTTTTATTACCACC
ATCATTGATTTCAAAATAAGAACAATCGAACTGGATGGTAAACGGATTAAACTTCAAATCTGGGATACAGCTGGTCAAGA
ACGTTTCCGAACTATTACAACTATAAGAAACTGGATTAGGAACATAGAGCAACATGCTTCCGATAATGTGAACAAGATTT
TGGTAGGCAACAAAGCTGACATGGATGAAAGCAAAAGGGCCGTACCAACTTCAAAGGGGCAAGCACTTGCTGATGAATAT
GGCATCAAGTTCTTTGAAACGAGTGCAAAGACAAACCTGAATGTCGAGCAGGTTTTCTTTTCAATAGCAAGGGATATTAA
GCAAAGACTTGCGGAGACTGATTCCAAGACTGAGGATCGCACGATCAAGATCAACAAACCAGAGGGTGATGCTGAGGCCA
CAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12233.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis