Browse Element(s) Details


Os.12289.1.S1_at

Description gb:AK122158.1
DB_XREF= gi:37991804
TID=Os.12289.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033147B11, full insert sequence.
FL= gb:AK058330.1 gb:AK122158.1 gb:AY327105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4744610/11Double-stranded DNA-binding domain containing protein, expressed
LOC_Os09g310191/11ubiquitin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46930OsAffx.27348.1.S1_x_at11/115+27077743..27078144hypothetical protein
LOC_Os05g46940OsAffx.27349.1.S1_at11/115+27078591..27079794hypothetical protein
LOC_Os05g46950Os.7382.1.S1_at10/115+27080004..27083564expressed protein
LOC_Os05g46950OsAffx.15134.1.S1_s_at10/115+27080004..27083564expressed protein
LOC_Os05g47442Os.53556.1.S1_at11/115+27094745..27095344expressed protein
LOC_Os05g47446Os.12289.1.S1_at10/115+27095954..27100503Double-stranded DNA-binding domain containing protein, expressed
LOC_Os05g47450OsAffx.20387.1.S1_x_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47450OsAffx.10632.1.S1_at1/115+27103088..27109143retrotransposon protein, putative, unclassified
LOC_Os05g47460NANA5+27110507..27113179hypothetical protein
LOC_Os05g47470Os.5815.1.S1_at11/115+27114902..27116123expressed protein
LOC_Os05g47480Os.55121.1.S1_at10/115+27117833..27119322Transcription factor TFIIB repeat family protein, expressed
LOC_Os05g47490Os.47886.1.S1_at11/115+27120348..27126986multidrug resistance protein 1 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0006512biological_processubiquitin cycle
GO:0016567biological_processprotein ubiquitination
GO:0042787biological_processprotein ubiquitination during ubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0005840cellular_componentribosome
GO:0003690molecular_functiondouble-stranded DNA binding
GO:0003735molecular_functionstructural constituent of ribosome
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12289.1.S1_at--414--7871Chr05:27096347..27096371 (25 bp)
GGTTTGGCTTGTTCCATTGATGACA
LOC_Os05g47446
Os.12289.1.S1_at--93--131Chr05:27096323..27096347 (25 bp)
ATTCAAACTTTTGACTGCTCCGAAG
LOC_Os05g47446
Os.12289.1.S1_at--469--8473Chr09:18668993..18669017 (25 bp)
TGGCCCACATGGAGAGCAGCTGGCT
LOC_Os09g31019
Os.12289.1.S1_at--1085--6272Chr08:22591681..22591700 (20 bp)
GATGTATAGCAGTACTCGCTCCGAA
NONE
Os.12289.1.S1_at--485--9911Chr05:27096157..27096181 (25 bp)
TACTCGCTCCGAAGTGTGTATCCAT
LOC_Os05g47446
Os.12289.1.S1_at--1061--1191Chr05:27096123..27096147 (25 bp)
AGTATCTTAGTTGCTCCTGTCTGAC
LOC_Os05g47446
Os.12289.1.S1_at--819--9271Chr05:27096109..27096133 (25 bp)
TCCTGTCTGACGTTTTGTCGGTAGA
LOC_Os05g47446
Os.12289.1.S1_at--1040--8951Chr05:27096084..27096108 (25 bp)
TGAATTCCGGTAGCGGAGGCGTCCT
LOC_Os05g47446
Os.12289.1.S1_at--212--911Chr05:27096068..27096092 (25 bp)
AGGCGTCCTGTGTGTATGCTACTAG
LOC_Os05g47446
Os.12289.1.S1_at--425--2911Chr05:27095969..27095993 (25 bp)
AAGGATTGCCGGTAGGCATCCCCAA
LOC_Os05g47446
Os.12289.1.S1_at--1087--9271Chr05:27095952..27095975 (24 bp)
TCCCCAATCGAGTTTCATTCCTAAA
NONE
Target Sequence 
GGTTTGGCTTGTTCCATTGATGACATTCAAACTTTTGACTGCTCCGAAGNGNNNNTNCNNCANNTCNNNNNNNTNTNNNN
NNCTNNNNNNCCGACCAGTACTTACCTGCTCCTTGCTCTGGCCCACATGGAGAGCAGCTGGCTCGTTGGAGTAAATTGAT
TAGCGAACAATAGGGTCGGATGTATAGCAGTACTCGCTCCGAAGTGTGTATCCATCATATCATGAGTATCTTAGTTGCTC
CTGTCTGACGTTTTGTCGGTAGATGAATTCCGGTAGCGGAGGCGTCCTGTGTGTATGCTACTAGTATTTTTTAATGTACT
TTGGGTGGTATCNCAANNANNNNNNNNAANNNATGCTAGAGATATCATAAGCTACAACAAGGATTGCCGGTAGGCATCCC
CAATCGAGTTTCATTCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis