Browse Element(s) Details


Os.12316.1.S1_at

Description gb:AK071648.1
DB_XREF= gi:32981671
TID=Os.12316.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023106H02, full insert sequence.
FL= gb:AK071648.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4400010/11Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g073901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os12g44010OsAffx.20111.1.S1_at11/1112+27267698..27269080expressed protein
LOC_Os12g44020Os.15738.1.S1_at11/1112+27270290..27273545expressed protein
LOC_Os12g44020OsAffx.9512.1.S1_x_at3/1112+27270290..27273545expressed protein
LOC_Os12g44030OsAffx.9512.1.S1_x_at1/1112+27276298..27277590expressed protein
LOC_Os12g44040Os.27105.1.S1_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.27105.1.S2_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44040Os.9552.1.S1_s_at11/1112+27279627..27282727transposase protein, putative, expressed
LOC_Os12g44050Os.53424.1.S1_at10/1112+27282857..27283690expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12316.1.S1_at--239--5991Chr12:27264503..27264527 (25 bp)
GAGACATACCAGCTGCAGGTCGACT
LOC_Os12g44000
Os.12316.1.S1_at--678--8911Chr12:27264474..27264498 (25 bp)
TGAGCATTATCCCATGGAGGCGCCT
LOC_Os12g44000
Os.12316.1.S1_at--1126--1951Chr12:27262307..27262331 (25 bp)
ACTGTATGATTCTTGGTCACCTGCA
LOC_Os12g44000
Os.12316.1.S1_at--273--7831Chr12:27262293..27262317 (25 bp)
GGTCACCTGCAATGACTGTCAGTTC
LOC_Os12g44000
Os.12316.1.S1_at--638--1231Chr12:27262273..27262297 (25 bp)
AGTTCGGTCTGCATCAGCATTTTGT
LOC_Os12g44000
Os.12316.1.S1_at--164--5831Chr12:27262117..27262141 (25 bp)
GACCGCTATGTTAGGAATTGCCGCA
LOC_Os12g44000
Os.12316.1.S1_at--134--8251Chr12:27262027..27262051 (25 bp)
GGCACTTTTGCCATTCAGTAATCGT
LOC_Os12g44000
Os.12316.1.S1_at--1035--10491Chr12:27261950..27261974 (25 bp)
TTAAGCATCACTCTATTGGACCACC
LOC_Os12g44000
Os.12316.1.S1_at--364--8092Chr12:3643155..3643178 (24 bp)
GGACCACCAAGCTTAACTGCTGGGT
LOC_Os12g07390
Os.12316.1.S1_at--130--6871Chr12:27261906..27261930 (25 bp)
GTTTGTACATGAGCTGCCTGCACAC
LOC_Os12g44000
Os.12316.1.S1_at--1057--5171NONE
GCAAGTGTACCATGCTTGATTCTCT
NONE
Target Sequence 
GAGACATACCAGCTGCAGGTCGACTTCCCTGAGCATTATCCCATGGAGGCGCCTCAGGTCATTTTTNCTNCAACCCGGCG
CCGATGCATCCACACATTTACAGCAANCGGGCACATCTNTTTAGATATACTGTATGATTCTTGGTCACCTGCAATGACTG
TCAGTTCGGTCTGCATCAGCATTTTGTCAATGTTGTCAAGTTCACCAGCAAAGCAACGCCCTCAAGACAATGACCGCTAT
GTTAGGAATTGCCGCAATGGGAGGTCGCCGNANGAGACNAGATGGTGGTTCCATGATGACAAAGTGTAAGAGGAACTAGT
TGGCACTTTTGCCATTCAGTAATCGTAATACCTTGAAATCTCTTGCAAGGGGAAAATGAGATGAATGTAGGCTTACTGTT
AAGCATCACTCTATTGGACCACCAAGCTTAACTGCTGGGTTGGTTTGTACATGAGCTGCCTGCACACATGTCAAGTCATG
AATATAATATTACCATAAATGATTATACAGAATAAGCAAGTGTACCATGCTTGATTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis