Browse Element(s) Details


Os.12331.1.S1_at

Description gb:AY156510.1
DB_XREF= gi:27085277
GEN=DPK1
TID=Os.12331.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.12331 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) serinethreonine protein kinase (DPK1) mRNA, complete cds.
PROD=serinethreonine protein kinase
FL= gb:AK121704.1 gb:AK111800.1 gb:AK099003.1 gb:AK111601.1 gb:AY156510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1275011/11serine/threonine protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12700NANA8+7519083..7525264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12710NANA8+7526782..7528913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12720NANA8+7531068..7532771retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g12730OsAffx.16962.1.S1_at11/118+7533790..7541820Cycloartenol synthase, putative, expressed
LOC_Os08g12740OsAffx.16963.1.S1_at11/118+7542299..7544988NB-ARC domain containing protein, expressed
LOC_Os08g12750Os.12331.1.S1_at11/118+7547431..7552419serine/threonine protein kinase, putative, expressed
LOC_Os08g12760Os.7188.1.S1_at11/118+7552756..7556829YT521-B-like family protein, expressed
LOC_Os08g12780Os.25324.2.S1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780Os.25324.1.A1_at11/118+7562192..7567953expressed protein
LOC_Os08g12780OsAffx.16965.1.S1_x_at10/118+7562192..7567953expressed protein
LOC_Os08g12790OsAffx.24242.4.S1_x_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.4.S1_at11/118+7570564..7571562hypothetical protein
LOC_Os08g12790OsAffx.24242.5.S1_x_at1/118+7570564..7571562hypothetical protein
LOC_Os08g12800Os.54847.1.S1_at11/118+7577145..7582056Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12331.1.S1_at--511--831Chr08:7551950..7551974 (25 bp)
ATGGAGGTCGTTAACACTGTCCGGA
LOC_Os08g12750
Os.12331.1.S1_at--585--5731Chr08:7552016..7552040 (25 bp)
GACTGAGTCACAGCCAGGATCCAGG
LOC_Os08g12750
Os.12331.1.S1_at--1117--6751Chr08:7552066..7552090 (25 bp)
GTTAAGTCCTGTGTACCTATCATAT
LOC_Os08g12750
Os.12331.1.S1_at--151--3871Chr08:7552128..7552152 (25 bp)
CTGAGTGTACTTGGCGTCGCGCGTT
LOC_Os08g12750
Os.12331.1.S1_at--964--6711Chr08:7552150..7552174 (25 bp)
GTTCTCTTCGTTTACCCTAGACAAT
LOC_Os08g12750
Os.12331.1.S1_at--442--1751Chr08:7552175..7552199 (25 bp)
ACCTAGTATCTATCGTCAGACTGGA
LOC_Os08g12750
Os.12331.1.S1_at--738--1611Chr08:7552207..7552231 (25 bp)
AGCGGTAGCTTTTTATCTTTGACAA
LOC_Os08g12750
Os.12331.1.S1_at--919--2411Chr08:7552236..7552260 (25 bp)
AAAACACCATGCAGGGCTCTTGTTG
LOC_Os08g12750
Os.12331.1.S1_at--119--10791Chr08:7552255..7552279 (25 bp)
TTGTTGCAACAACCGCATGTTCCTG
LOC_Os08g12750
Os.12331.1.S1_at--27--6711Chr08:7552273..7552297 (25 bp)
GTTCCTGCTGTATGTTATCTGTTGT
LOC_Os08g12750
Os.12331.1.S1_at--115--491Chr08:7552289..7552313 (25 bp)
ATCTGTTGTAATCATCCTGCTTGGA
LOC_Os08g12750
Target Sequence 
ATGGAGGTCGTTAACACTGTCCGGAGGGCCCGCTTCCGGTGTTGCATCTCCCAGCCAATGACCCTAGACTGAGTCACAGC
CAGGATCCAGGGTGGAAAAAGGCAACCTGGAGAAAAGTTAAGTCCTGTGTACCTATCATATTAATAGGCCTGTTCTGCAG
AGAAGATGAAAGCCCAAGCTGAGTGTACTTGGCGTCGCGCGTTCTCTTCGTTTACCCTAGACAATACCTAGTATCTATCG
TCAGACTGGAATGTATTAGCGGTAGCTTTTTATCTTTGACAACAAAAAAACACCATGCAGGGCTCTTGTTGCAACAACCG
CATGTTCCTGCTGTATGTTATCTGTTGTAATCATCCTGCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis