Browse Element(s) Details


Os.12349.1.S1_at

Description gb:AK100908.1
DB_XREF= gi:32986117
TID=Os.12349.1
CNT=82
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) UXS-3 mRNA for UDP-glucuronic acid decarboxylase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full insert sequence.
FL= gb:AK060031.1 gb:AK100908.1 gb:AB079064.1 gb:AK061632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1698011/11RmlD substrate binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
LOC_Os03g17030Os.53106.1.S1_at11/113+9440218..9444446polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0042732biological_processD-xylose metabolism
GO:0005829cellular_componentcytosol
GO:0003824molecular_functioncatalytic activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12349.1.S1_at--810--4751Chr03:9418748..9418867 (25 bp)
GCTGACATGGTTAATGGTCTTATTA
LOC_Os03g16980
Os.12349.1.S1_at--298--9771Chr03:9418854..9418878 (25 bp)
TAATGGTCTTATTAAGCTGATGAAC
LOC_Os03g16980
Os.12349.1.S1_at--784--5471Chr03:9419058..9419081 (24 bp)
GAACTTGCTGAGAATGTGAAGGAGT
LOC_Os03g16980
Os.12349.1.S1_at--511--5311Chr03:9419075..9419183 (25 bp)
GAAGGAGTTGATCAACCCAGAGGTT
LOC_Os03g16980
Os.12349.1.S1_at--421--351Chr03:9419169..9419193 (25 bp)
ATCAACCCAGAGGTTACCGTCACAA
LOC_Os03g16980
Os.12349.1.S1_at--1120--6151Chr03:9419178..9419202 (25 bp)
GAGGTTACCGTCACAATGACTGAGA
LOC_Os03g16980
Os.12349.1.S1_at--379--5731Chr03:9419195..9419219 (25 bp)
GACTGAGAACACTCCTGATGATCCT
LOC_Os03g16980
Os.12349.1.S1_at--792--9251Chr03:9419216..9419240 (25 bp)
TCCTCGTCAGAGGAAGCCAGACATT
LOC_Os03g16980
Os.12349.1.S1_at--151--7491Chr03:9419264..9419288 (25 bp)
GTGGGAGCCCAAGATCGTTCTGCGT
LOC_Os03g16980
Os.12349.1.S1_at--144--1671Chr03:9419269..9419293 (25 bp)
AGCCCAAGATCGTTCTGCGTGATGG
LOC_Os03g16980
Os.12349.1.S1_at--535--511Chr03:9419277..9419301 (25 bp)
ATCGTTCTGCGTGATGGCTTGGTGC
LOC_Os03g16980
Target Sequence 
GCTGACATGGTTAATGGTCTTATTAAGCTGATGAACGGGGACAACACTGGACCAATTAATTTGGGAAACCCAGGTGAATT
CNACCATGCTGGAACTTGCTGAGAATGTGAAGGAGTTGATCAACCCAGAGGTTACCGTCACAATGACTGAGAACACTCCT
GATGATCCTCGTCAGAGGAAGCCAGACATTACAAAGGCAAAGGAAGTTTTGGGGTGGGAGCCCAAGATCGTTCTGCGTGA
TGGCTTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis