Browse Element(s) Details


Os.12393.2.S1_x_at

Description gb:D30763.1
DB_XREF= gi:505134
TID=Os.12393.2
CNT=205
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.12393 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ferredoxin, complete cds.
PROD=ferredoxin
FL= gb:AK119605.1 gb:AY072818.1 gb:AK119206.1 gb:D30763.1 gb:AK061654.1 gb:AK119709.1 gb:AK120393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0138011/11Ferredoxin-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12393.2.S1_x_at--298--4271Chr08:236084..236108 (25 bp)
CCGGCGAGCAACAAGCTGGGAGACA
LOC_Os08g01380
Os.12393.2.S1_x_at--1006--1031Chr08:235996..236020 (25 bp)
AGGTGCCGGACGACGTGTACATCCT
LOC_Os08g01380
Os.12393.2.S1_x_at--782--3931Chr08:235887..235911 (25 bp)
CGGCGAGATCGACCAGTCCGACCAG
LOC_Os08g01380
Os.12393.2.S1_x_at--1019--4591Chr08:235885..235909 (25 bp)
GCGAGATCGACCAGTCCGACCAGAG
LOC_Os08g01380
Os.12393.2.S1_x_at--1153--6031Chr08:235883..235907 (25 bp)
GAGATCGACCAGTCCGACCAGAGCT
LOC_Os08g01380
Os.12393.2.S1_x_at--1051--6171Chr08:235772..235796 (25 bp)
GAGGACGACCTCATCTAATCAATCA
LOC_Os08g01380
Os.12393.2.S1_x_at--75--971Chr08:235771..235795 (25 bp)
AGGACGACCTCATCTAATCAATCAA
LOC_Os08g01380
Os.12393.2.S1_x_at--886--1851Chr08:235768..235792 (25 bp)
ACGACCTCATCTAATCAATCAAGCA
LOC_Os08g01380
Os.12393.2.S1_x_at--667--4071Chr08:235767..235791 (25 bp)
CGACCTCATCTAATCAATCAAGCAA
LOC_Os08g01380
Os.12393.2.S1_x_at--495--5231Chr08:235684..235708 (25 bp)
GAATATAATGTCGTCGTCCCTATGC
LOC_Os08g01380
Os.12393.2.S1_x_at--1098--10491Chr08:235575..235599 (25 bp)
TTAATGTACGTTTTGCTGCACCTGC
LOC_Os08g01380
Target Sequence 
CCGGCGAGCAACAAGCTGGGAGACAGGCTGCGGATGCAGGCGACGTACAACGTGAAGCTGATCACACCGGACGGCGAGGT
GGAGCTGCAGGTGCCGGACGACGTGTACATCCTGGNACCNAGGCGGAGGAGGAAGGGATCGACCTGCCTTACTCCTGCCG
CGCGGGCTCCTGCTCCTCCTGCGCCGGCAAGGTGGTCTCCGGCGAGATCGACCAGTCCGACCAGAGCTTCCTCGACGACG
ACCAGGTTGCCGCCGGCTGGGTCCTCACCTGCCACGCCTACCCCAAGTCCGACGTCGTCATCGAGACCCACAAGGAGGAC
GACCTCATCTAATCAATCAAGCAAGCTCCATATTTATAAATCTCTCGATCCATCTCCATGCGTTCTTGAGTTTATCAATT
AAGAATATAATGTCGTCGTCCCTATGCTATGCAAGCAAAGTATTACGTACGTATATGTTGAGCGAGATAACAAAACACAG
GCGTGCCCGAGGGTTAATTGTTGTTGTTTAATTAATGTACGTTTTGCTGCACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12393.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis