Browse Element(s) Details


Os.12605.1.S1_s_at

Description gb:AU165531
DB_XREF= gi:11564895
DB_XREF=AU165531
CLONE=E2183
TID=Os.12605.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12605 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T10648 (A.thaliana) T10648 hypothetical protein T13K14.220 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0367011/11Galactosyltransferase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03630Os.52256.1.S1_at11/118+1710152..1713537acyl-activating enzyme 14, putative, expressed
LOC_Os08g03640Os.12290.1.S1_at11/118+1714065..171679560S acidic ribosomal protein P0, putative, expressed
LOC_Os08g03650Os.10429.1.S1_at11/118+1717285..1723595transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g03660OsAffx.22940.2.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.1.S1_s_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_at11/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.18.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.3.S1_x_at9/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.5.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660Os.35344.3.S1_x_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.22940.2.S1_at8/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03660OsAffx.31552.2.S1_at1/118+1728231..1735503transposon protein, putative, Mutator sub-class
LOC_Os08g03670Os.12605.1.S1_s_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03670OsAffx.16812.2.S1_at11/118+1738321..1742818Galactosyltransferase family, putative, expressed
LOC_Os08g03676Os.52441.1.S1_at11/118+1743506..1746109glycerine-rich protein, putative, expressed
LOC_Os08g03682Os.49633.1.S1_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03682OsAffx.16813.1.S1_x_at11/118+1746781..1749181Cytochrome P450 family protein, expressed
LOC_Os08g03690Os.16607.1.S1_at10/118+1749632..1750761Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os08g03700OsAffx.29017.1.S1_x_at11/118+1751367..1752854Acyltransferase family protein
LOC_Os08g03710OsAffx.9194.2.S1_at11/118+1753458..1754055hypothetical protein
LOC_Os08g03710OsAffx.2609.2.S1_x_at1/118+1753458..1754055hypothetical protein
LOC_Os08g03720NANA8+1758813..1764478transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g03730NANA8+1767059..1769600transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12605.1.S1_s_at--784--5911Chr08:1742254..1742278 (25 bp)
GAGCATCCTGCTGCAACTACAGATA
LOC_Os08g03670
Os.12605.1.S1_s_at--764--4711Chr08:1742360..1742384 (25 bp)
GCTGGCTGGTGTTCTCTTTTTTGAC
LOC_Os08g03670
Os.12605.1.S1_s_at--784--711Chr08:1742420..1742444 (25 bp)
ATGTTGACTCGATCGAGCTCATCGC
LOC_Os08g03670
Os.12605.1.S1_s_at--95--1591Chr08:1742435..1742459 (25 bp)
AGCTCATCGCTTCACATGGCTGTGA
LOC_Os08g03670
Os.12605.1.S1_s_at--317--8991Chr08:1742470..1742494 (25 bp)
TGAAGATTAGGCAGCTCCGGTCCAT
LOC_Os08g03670
Os.12605.1.S1_s_at--199--3511Chr08:1742492..1742516 (25 bp)
CATGGTTCCATGCATTTGCCTGATT
LOC_Os08g03670
Os.12605.1.S1_s_at--807--451Chr08:1742527..1742551 (25 bp)
ATCTCGTGGCGTCTATGTCCTTATT
LOC_Os08g03670
Os.12605.1.S1_s_at--281--7251Chr08:1742543..1742567 (25 bp)
GTCCTTATTCCTGTAATTGATCCCA
LOC_Os08g03670
Os.12605.1.S1_s_at--858--10191Chr08:1742610..1742634 (25 bp)
TATATGCCTGTTCTTGTAGCCTAGA
LOC_Os08g03670
Os.12605.1.S1_s_at--20--6891Chr08:1742745..1742769 (25 bp)
GTATTTTCTCTGTCATTGCTATTCT
LOC_Os08g03670
Os.12605.1.S1_s_at--61--10211Chr08:1742764..1742788 (25 bp)
TATTCTTGGATAGCACCCACTCAAC
LOC_Os08g03670
Target Sequence 
GAGCATCCTGCTGCAACTACAGATAGCNGAGNCGACAAATGGATTAAATCAGTCACTCGACTTTAGCATTCCTNCCTCCN
NCTGCCGGTTATTTTGGTTGGTGGGGTGGCTGGCTGGTGTTCTCTTTTTTGACNCGAAGAATCACCTGACAATAGCTTAG
CTNCTGCAATGTTGACTCGATCGAGCTCATCGCTTCACATGGCTGTGATGTTGGGGCTTGAAGATTAGGCAGCTCCGGTC
CATGGTTCCATGCATTTGCCTGATTTCCATTCGCCATCTCGTGGCGTCTATGTCCTTATTCCTGTAATTGATCCCAATTT
TGATGTAGTAGATGATCAGATCAGCATATTATTAGATATATATGCCTGTTCTTGTAGCCTAGAATCCTAGAAACTTGGAC
AGAATCCTGATGATGCTAAAAATCATCTCTGTTCTTCTCTTTCTTGTAAAAGATAGCCTCTTTTTTTCTCCACTCATGAG
TTCCATCGATGATGTATTTTCTCTGTCATTGCTATTCTTGGATAGCACCCACTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12605.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis