Browse Element(s) Details


Os.12777.1.S1_a_at

Description gb:AF310253.1
DB_XREF= gi:11141756
TID=Os.12777.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12777 (NCBI UniGene Cluster)
DEF=Oryza sativa profilin A mRNA, complete cds.
PROD=profilin A
FL= gb:AF310253.1 gb:AK070595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1768011/11Profilin A, putative, expressed
LOC_Os10g1766011/11Profilin A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein
LOC_Os10g17680Os.12777.1.S1_a_at11/1110+8605864..8606978Profilin A, putative, expressed
LOC_Os10g17690OsAffx.20544.1.S1_x_at11/1110+8608595..8611179NB-ARC domain containing protein, expressed
LOC_Os10g17700OsAffx.8299.1.S1_x_at11/1110+8614779..8615174retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g17710Os.41695.15.S1_s_at9/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.2.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.5.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17710Os.41695.3.S1_x_at5/1110+8617020..8620555calcineurin-like phosphoesterase family protein, putative
LOC_Os10g17724NANA10+8626237..8632696Zinc knuckle family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0008154biological_processactin polymerization and/or depolymerization
GO:0009826biological_processunidimensional cell growth
GO:0005618cellular_componentcell wall
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12777.1.S1_a_at--1129--9692Chr10:8596912..8596936 (25 bp)
TCAAACCGGAGGAGATGACCAACAT
LOC_Os10g17660
Os.12777.1.S1_a_at--1081--5832Chr10:8596928..8596952 (25 bp)
GACCAACATCATGAAGGACTTCGAC
LOC_Os10g17660
Os.12777.1.S1_a_at--401--9612Chr10:8596936..8596960 (25 bp)
TCATGAAGGACTTCGACGAGCCGGG
LOC_Os10g17660
Os.12777.1.S1_a_at--279--12Chr10:8596976..8597000 (25 bp)
CGGACTGTTTCTTGGACCAACCAAG
LOC_Os10g17660
Os.12777.1.S1_a_at--1093--1692Chr10:8596991..8597015 (25 bp)
ACCAACCAAGTACATGGTCATCCAA
LOC_Os10g17660
Os.12777.1.S1_a_at--188--7712Chr10:8597006..8597030 (25 bp)
GGTCATCCAAGGTGAACCTGGCGCT
LOC_Os10g17660
Os.12777.1.S1_a_at--980--3212Chr10:8597013..8597037 (25 bp)
CAAGGTGAACCTGGCGCTGTCATTC
LOC_Os10g17660
Os.12777.1.S1_a_at--552--3912Chr10:8597023..8597047 (25 bp)
CTGGCGCTGTCATTCGTGGCAAGAA
LOC_Os10g17660
Os.12777.1.S1_a_at--137--5152Chr10:8597041..8597189 (25 bp)
GCAAGAAGGGATCAGGAGGCATCAC
LOC_Os10g17660
Os.12777.1.S1_a_at--274--5712Chr10:8597281..8597305 (25 bp)
GACTACCTCGTAGAGCAGGGCCTGT
LOC_Os10g17660
Os.12777.1.S1_a_at--630--9972Chr10:8597284..8597308 (25 bp)
TACCTCGTAGAGCAGGGCCTGTAGA
LOC_Os10g17660
Target Sequence 
TCAAACCGGAGGAGATGACCAACATCATGAAGGACTTCGACGAGCCGGGGTTCCTCGCCCCGACCGGACTGTTTCTTGGA
CCAACCAAGTACATGGTCATCCAAGGTGAACCTGGCGCTGTCATTCGTGGCAAGAAGGGATCAGGAGGCATCACGGTGAA
GAAGACCGGGCAGGCGCTGGTGGTCGGCATCTACGACGAGCCGATGACCCCAGGGCAGTGCAACATGGTGGTCGAGAGGC
TCGGCGACTACCTCGTAGAGCAGGGCCTGTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12777.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis