Browse Element(s) Details


Os.12809.1.S1_at

Description gb:AK060899.1
DB_XREF= gi:32970917
TID=Os.12809.1
CNT=43
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.12809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D04, full insert sequence.
FL= gb:AK060899.1 gb:AK103324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4849011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48450Os.18595.1.A1_at11/117+28984109..28986260NAC-domain containing protein 18, putative, expressed
LOC_Os07g48460Os.27926.1.A1_s_at11/117+28991039..28993144expressed protein
LOC_Os07g48460Os.12186.2.S1_x_at2/117+28991039..28993144expressed protein
LOC_Os07g48470OsAffx.15220.2.S1_s_at8/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48470OsAffx.15220.1.S1_s_at7/117+28993550..28997356retrotransposon protein, putative, unclassified
LOC_Os07g48480OsAffx.28955.1.S1_at11/117+28998773..28999003hypothetical protein
LOC_Os07g48490Os.12809.1.S1_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12809.1.S1_s_at11/117+29002524..29004515expressed protein
LOC_Os07g48490Os.28465.1.S1_at3/117+29002524..29004515expressed protein
LOC_Os07g48490Os.12186.2.S1_x_at1/117+29002524..29004515expressed protein
LOC_Os07g48500Os.48976.1.A1_s_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48500Os.12072.1.S1_at11/117+29007183..29008250stress responsive protein, putative, expressed
LOC_Os07g48510Os.11997.1.S1_at11/117+29009796..29011559Thioredoxin-like 1, putative, expressed
LOC_Os07g48520NANA7+29022904..29023547hypothetical protein
LOC_Os07g48540NANA7+29028443..29028881hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12809.1.S1_at--241--6451Chr07:29003912..29003936 (25 bp)
GATCACGGCGGCATCCACGATGGCA
LOC_Os07g48490
Os.12809.1.S1_at--110--1951Chr07:29003916..29003940 (25 bp)
ACGGCGGCATCCACGATGGCACCGA
LOC_Os07g48490
Os.12809.1.S1_at--603--7451Chr07:29004280..29004304 (25 bp)
GTGTCAGTGTGTGTCCTTTTGCGAG
LOC_Os07g48490
Os.12809.1.S1_at--264--9651Chr07:29004283..29004307 (25 bp)
TCAGTGTGTGTCCTTTTGCGAGCCA
LOC_Os07g48490
Os.12809.1.S1_at--300--1111Chr07:29004285..29004309 (25 bp)
AGTGTGTGTCCTTTTGCGAGCCAGT
LOC_Os07g48490
Os.12809.1.S1_at--622--7471Chr07:29004288..29004312 (25 bp)
GTGTGTCCTTTTGCGAGCCAGTGAT
LOC_Os07g48490
Os.12809.1.S1_at--395--8691Chr07:29004291..29004315 (25 bp)
TGTCCTTTTGCGAGCCAGTGATTGC
LOC_Os07g48490
Os.12809.1.S1_at--266--4311Chr07:29004294..29004318 (25 bp)
CCTTTTGCGAGCCAGTGATTGCTAT
LOC_Os07g48490
Os.12809.1.S1_at--654--10391Chr07:29004296..29004320 (25 bp)
TTTTGCGAGCCAGTGATTGCTATGA
LOC_Os07g48490
Os.12809.1.S1_at--310--9151Chr07:29004299..29004323 (25 bp)
TGCGAGCCAGTGATTGCTATGAGAT
LOC_Os07g48490
Os.12809.1.S1_at--297--5871Chr07:29004302..29004326 (25 bp)
GAGCCAGTGATTGCTATGAGATGAA
LOC_Os07g48490
Target Sequence 
GATCACGGCGGCATCCACGATGGCACCGAGATCGTGCTGTGGAAGTGGTGCGAGGGTGACAACCAGCGCTGGAAGATCCT
CCCCTGGTAGATTCCGGGGAGGGGGAGCTGCATTGCATTGCCATCGTCGTCGCGTCTGCTCTGCTTCTACTCTAGCTAAT
AATTTGATCGATCTGCTACCGAAATAAGACCGTGTTCGTTCGTTCGATCGATCGGAGTATGGCAGTCAATGGTGTCCGTC
CGTCCTCGAGTTTGTGTCAGTGTGTGTCCTTTTGCGAGCCAGTGATTGCTATGAGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis