Browse Element(s) Details


Os.1314.1.S1_at

Description gb:AF010320.1
DB_XREF= gi:2305114
TID=Os.1314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1314 (NCBI UniGene Cluster)
DEF=Oryza sativa ferredoxin mRNA, complete cds.
PROD=ferredoxin
FL= gb:AF010320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g013801/11Ferredoxin-1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01339NANA8+210391..211728NA
LOC_Os08g01350Os.34066.1.S1_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01350Os.15047.1.S1_s_at11/118+216137..218910IP07178p, putative, expressed
LOC_Os08g01360Os.20625.1.S1_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.1.S1_x_at11/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360Os.20625.2.S1_x_at10/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01360OsAffx.27554.1.S1_at1/118+221868..226105PA domain containing protein, expressed
LOC_Os08g01370Os.10590.1.S1_s_at11/118+227469..228184expressed protein
LOC_Os08g01370Os.10590.1.S1_at11/118+227469..228184expressed protein
LOC_Os08g01380Os.12393.2.S1_x_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_s_at11/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.12393.2.S1_at10/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01380Os.1314.1.S1_at1/118+235435..236281Ferredoxin-1, chloroplast precursor, putative, expressed
LOC_Os08g01390Os.20083.1.S1_at11/118+244242..252410Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os08g01400Os.49551.1.S1_at11/118+253666..254973expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009416biological_processresponse to light stimulus
GO:0009767biological_processphotosynthetic electron transport
GO:0009570cellular_componentchloroplast stroma
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1314.1.S1_at--479--9171NONE
TGCCGGACAACGTGTTCATCCTGGA
NONE
Os.1314.1.S1_at--1082--5611NONE
GACAACGTGTTCATCCTGGACCAGG
NONE
Os.1314.1.S1_at--429--8791NONE
TGTTCATCCTGGACCAGGCGGAGGA
NONE
Os.1314.1.S1_at--278--8391NONE
GGCGAAATCAACCAATCCGACCAAA
NONE
Os.1314.1.S1_at--978--5331NONE
GAAATCAACCAATCCGACCAAAACT
NONE
Os.1314.1.S1_at--485--3351NONE
CACGCCAACCCCAAGTCGGATGTTG
NONE
Os.1314.1.S1_at--313--9431NONE
TCGGATGTTGTTATCGAGACCCACA
NONE
Os.1314.1.S1_at--970--7991NONE
GGATGTTGTTATCGAGACCCACAAG
NONE
Os.1314.1.S1_at--171--6191NONE
GAGGACGACCTTACTTAATCAATCA
NONE
Os.1314.1.S1_at--410--251Chr08:235436..235568 (25 bp)
ATATCCATATCACATTTTGGGTGTC
LOC_Os08g01380
Os.1314.1.S1_at--931--3571NONE
CATATCACATTTTGGGTGTCATATA
NONE
Target Sequence 
TGCCGGACAACGTGTTCATCCTGGACCAGGCGGAGGAGGAAGGGATCGACCTGCCTTACTCCTGCCGCGCGGGCTCCTGC
TCCTCCTGCGCCGGCAAGGTGGTCTCCGGCGAAATCAACCAATCCGACCAAAACTTCCTCCACAACAACCAAGTTGCCGC
CGGCTGGGTCCTCACTTGCCACGCCAACCCCAAGTCGGATGTTGTTATCGAGACCCACAAGGAGGACGACCTTACTTAAT
CAATCAAGCAAGCTCCATATTTATAAATCTTTCGATCCATCTCCATGCGTTCTGGAGTTTATCAATTAAGAATATAATGT
TGTCGTCCCTATGCTATGCAAGCAAAGTATAACGAAGGTATATGTTGAGCGAGATAACAAAACACAGGCGTGCCCGAGGG
TTAATTGTTGTTGTTTAATTAATGAACGTTTTGCTGCACCTGCTTAATCATATCCATATCACATTTTGGGTGTCATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis