Browse Element(s) Details


Os.13464.1.S1_at

Description gb:AK102460.1
DB_XREF= gi:32987669
TID=Os.13464.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13464 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033094C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094C11, full insert sequence.
FL= gb:AK102460.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4419011/11H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os04g487001/11H/ACA ribonucleoprotein complex subunit 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44140Os.9067.1.S1_at11/117+26380889..26382947Cytochrome P450 family protein, expressed
LOC_Os07g44160Os.27868.1.A1_s_at11/117+26392422..26395161transposon protein, putative, unclassified, expressed
LOC_Os07g44170OsAffx.28897.1.S1_at11/117+26395800..26397917pentatricopeptide, putative
LOC_Os07g44180Os.46402.1.S1_at11/117+26401979..26403015Hydrophobic protein LTI6B, putative, expressed
LOC_Os07g44190Os.13464.1.S1_at11/117+26405007..26407105H/ACA ribonucleoprotein complex subunit 4, putative, expressed
LOC_Os07g44200Os.52622.1.S1_at11/117+26411195..26412764DNA-binding storekeeper protein, putative, expressed
LOC_Os07g44210Os.23232.1.S1_at11/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.6305.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44210OsAffx.15286.1.S1_at2/117+26415275..26427637SNF2 domain-containing protein, putative, expressed
LOC_Os07g44220OsAffx.28898.1.S1_at11/117+26429266..26429583hypothetical protein
LOC_Os07g44230Os.53888.1.S1_at11/117+26431006..26433562ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009982molecular_functionpseudouridine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13464.1.S1_at--9--8571Chr07:26405353..26405377 (25 bp)
TGGATCCAGAGAGCGCAGCCAATGG
LOC_Os07g44190
Os.13464.1.S1_at--319--1471Chr07:26405244..26405268 (25 bp)
AGAATTATAGTACGCATTGGCTGAA
LOC_Os07g44190
Os.13464.1.S1_at--183--3611Chr07:26405230..26405254 (25 bp)
CATTGGCTGAATGTATCCTTTTGCT
LOC_Os07g44190
Os.13464.1.S1_at--910--10051Chr07:26405217..26405241 (25 bp)
TATCCTTTTGCTGCGGTTGTAGGGA
LOC_Os07g44190
Os.13464.1.S1_at--87--8031Chr07:26405195..26405219 (25 bp)
GGAGTTTGAGATGCCTATCTTTCCT
LOC_Os07g44190
Os.13464.1.S1_at--123--10171Chr07:26405180..26405204 (25 bp)
TATCTTTCCTTGCTGTGATCCCTTT
LOC_Os07g44190
Os.13464.1.S1_at--650--7391Chr07:26405166..26405190 (25 bp)
GTGATCCCTTTTCAACCATTAATGG
LOC_Os07g44190
Os.13464.1.S1_at--1136--9751Chr07:26405147..26405171 (25 bp)
TAATGGTTTCAAAGGCCTAATGCCC
LOC_Os07g44190
Os.13464.1.S1_at--313--9771Chr07:26405130..26405154 (25 bp)
TAATGCCCATCCTTGAATTACTACC
LOC_Os07g44190
Os.13464.1.S1_at--680--5211Chr07:26405116..26405140 (25 bp)
GAATTACTACCATTTTACTGCTGTG
LOC_Os07g44190
Os.13464.1.S1_at--666--8912Chr07:26405045..26405069 (25 bp)
TGAGCCATGTATTGCTGTTCCTGTT
LOC_Os07g44190
Target Sequence 
TGGATCCAGAGAGCGCAGCCAATGGAGATGGCGTGGAAGCTGAGAAAAGCGAAAAGAAAAAGGAGAAGAAAAAGAAGAAG
AGTCGAGATACAGAGGAGGCATAATAGGTAGAATTATAGTACGCATTGGCTGAATGTATCCTTTTGCTGCGGTTGTAGGG
AGTTTGAGATGCCTATCTTTCCTTGCTGTGATCCCTTTTCAACCATTAATGGTTTCAAAGGCCTAATGCCCATCCTTGAA
TTACTACCATTTTACTGCTGTGAAGTACTGTGGTAAGTAGCGATATTTCCATTGNAACTTGTTGAACAATGAGCCATGTA
TTGCTGTTCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis