Browse Element(s) Details


Os.13482.1.S1_x_at

Description gb:BI798552
DB_XREF= gi:15850276
DB_XREF=H110G06
CLONE=H110G06
TID=Os.13482.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13482 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_189339.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g306004/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30560OsAffx.12293.1.S1_at11/112+18180503..18180790hypothetical protein
LOC_Os02g30570OsAffx.5335.1.S1_at11/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30570OsAffx.24476.1.S1_at1/112+18181629..18184765F-box protein interaction domain containing protein
LOC_Os02g30580OsAffx.22947.1.S1_x_at11/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.2.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.3.S1_x_at6/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30580OsAffx.22947.5.S1_x_at1/112+18193147..18199508retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30590OsAffx.2810.1.S1_at11/112+18203314..18203817hypothetical protein
LOC_Os02g30600Os.5776.1.S1_at11/112+18205622..18206122expressed protein
LOC_Os02g30600Os.13482.1.S1_x_at4/112+18205622..18206122expressed protein
LOC_Os02g30610Os.57172.1.S1_at11/112+18213398..18214905expressed protein
LOC_Os02g30620Os.14990.1.S1_a_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.1.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30620Os.14990.2.S1_at11/112+18221542..18225610DnaJ domain containing protein, expressed
LOC_Os02g30624Os.12107.1.S1_a_at10/112+18225620..18229911U6 snRNA-associated Sm-like protein LSm6, putative, expressed
LOC_Os02g30630Os.1851.1.S1_at11/112+18230204..18232481Acetolactate synthase III, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13482.1.S1_x_at--137--451NONE
ATCTACACCGGCTAGCTACTACTCT
NONE
Os.13482.1.S1_x_at--436--9531NONE
TCTACACCGGCTAGCTACTACTCTT
NONE
Os.13482.1.S1_x_at--853--9851NONE
TACACCGGCTAGCTACTACTCTTTT
NONE
Os.13482.1.S1_x_at--457--2171NONE
ACACCGGCTAGCTACTACTCTTTTC
NONE
Os.13482.1.S1_x_at--818--1771NONE
ACCGGCTAGCTACTACTCTTTTCCA
NONE
Os.13482.1.S1_x_at--442--9231NONE
TCCATCCATCTCCTTAATTCCCTCC
NONE
Os.13482.1.S1_x_at--382--10511Chr02:18205926..18205950 (25 bp)
TTCAATTTCACTTCGTCTCTCTCCT
LOC_Os02g30600
Os.13482.1.S1_x_at--942--9731Chr02:18205927..18205951 (25 bp)
TCAATTTCACTTCGTCTCTCTCCTA
LOC_Os02g30600
Os.13482.1.S1_x_at--423--3131Chr02:18205929..18205953 (25 bp)
AATTTCACTTCGTCTCTCTCCTACT
LOC_Os02g30600
Os.13482.1.S1_x_at--1092--3691Chr02:18205955..18205990 (25 bp)
CTATGCATACTAATTTCTAGCTAGC
LOC_Os02g30600
Os.13482.1.S1_x_at--391--3571NONE
CATACTAATTTCTAGCTAGCTGCAC
NONE
Target Sequence 
ATCTACACCGGCTAGCTACTACTCTTTTCCANTTTCCATCCATCTCCTTAATTCCCTCCCCCCTTCAATTTCACTTCGTC
TCTCTCCTACTCCTATGCATACTAATTTCTAGCTAGCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13482.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis