Browse Element(s) Details


Os.13565.1.A1_at

Description gb:CR284436
DB_XREF= gi:44671002
DB_XREF=CR284436
CLONE=y717b08p3
TID=Os.13565.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.13565 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194094.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g450501/11reticulon family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44990OsAffx.15107.1.S1_at11/115+26070126..26074441Protein kinase domain containing protein, expressed
LOC_Os05g45000OsAffx.15108.1.S1_at11/115+26076104..26077536Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os05g45010OsAffx.27313.1.S1_at11/115+26081562..26084201Leucine Rich Repeat family protein
LOC_Os05g45020Os.6318.1.S1_at11/115+26087886..26089136Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g45030Os.11098.1.S1_at11/115+26092355..26093838calcium homeostasis regulator CHoR1, putative, expressed
LOC_Os05g45040Os.52901.1.S1_at11/115+26094181..26096566F-box domain containing protein, expressed
LOC_Os05g45050Os.13565.1.A1_s_at11/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.8249.1.S1_at10/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45050Os.13565.1.A1_at1/115+26096931..26099143reticulon family protein, putative, expressed
LOC_Os05g45060OsAffx.15109.1.S1_at11/115+26103373..26103996Zinc finger, C3HC4 type family protein
LOC_Os05g45070Os.55637.1.S1_at11/115+26106383..26107353Harpin-induced protein 1 containing protein, expressed
LOC_Os05g45080Os.52346.1.S1_at11/115+26109666..26111485UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45090NANA5+26113120..26114481UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13565.1.A1_at--663--151NONE
ATTAGAACTGTAGGATGAGCTGTAG
NONE
Os.13565.1.A1_at--900--1411NONE
AGAACTGTAGGATGAGCTGTAGAAG
NONE
Os.13565.1.A1_at--831--4271NONE
CCTGATCACTACTTGTCGGTTATTC
NONE
Os.13565.1.A1_at--777--3851NONE
CTGATCACTACTTGTCGGTTATTCC
NONE
Os.13565.1.A1_at--125--2031NONE
ACTACTTGTCGGTTATTCCATGCCT
NONE
Os.13565.1.A1_at--79--9871NONE
TACTTGTCGGTTATTCCATGCCTTT
NONE
Os.13565.1.A1_at--258--2071NONE
ACTTGTCGGTTATTCCATGCCTTTA
NONE
Os.13565.1.A1_at--481--3611Chr05:26097116..26097155 (24 bp)
CTTGTCGGTTATTCCATGCCTTTAC
LOC_Os05g45050
Os.13565.1.A1_at--18--2091NONE
ACATTTTGGTGTGGCCAGATGTGCT
NONE
Os.13565.1.A1_at--587--8611NONE
TGGTGTGGCCAGATGTGCTGAACAT
NONE
Os.13565.1.A1_at--1049--8651NONE
TGTGGCCAGATGTGCTGAACATCAA
NONE
Target Sequence 
ATTAGAACTGTAGGATGAGCTGTAGAAGGTACTATGCTAATTTATCATCCAGCCTGATCACTACTTGTCGGTTATTCCAT
GCCTTTACTGATAGTAAATACCTACATTTTGGTGTGGCCAGATGTGCTGAACATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13565.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis