Browse Element(s) Details


Os.13567.1.S1_at

Description gb:AK102584.1
DB_XREF= gi:32987793
TID=Os.13567.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033098E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033098E05, full insert sequence.
FL= gb:AK102584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0131011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01250Os.2486.1.S1_at11/115+152480..155641SNF7 family protein, expressed
LOC_Os05g01256Os.23082.1.S1_at11/115+156902..159661Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os05g01262Os.8646.1.S1_at11/115+160422..162842Translocon-associated protein beta containing protein, expressed
LOC_Os05g01270Os.11402.1.S1_at11/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01270Os.40035.1.A1_x_at1/115+163664..166526peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os05g01280NANA5+167930..168148expressed protein
LOC_Os05g01290Os.8540.1.S1_at2/115+171511..171720expressed protein
LOC_Os05g01300Os.12180.1.S1_at10/115+173739..175295CHCH domain containing protein, expressed
LOC_Os05g01310Os.13567.1.S1_at11/115+175760..179666ankyrin repeat family protein, putative, expressed
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0005242molecular_functioninward rectifier potassium channel activity
GO:0015271molecular_functionoutward rectifier potassium channel activity
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13567.1.S1_at--601--6071Chr05:176573..176597 (25 bp)
GAGTTAAATCCAAACGACGCCACGT
LOC_Os05g01310
Os.13567.1.S1_at--742--5151Chr05:176511..176535 (25 bp)
GCAAGCTGAACGTGCTCTGGAGGAT
LOC_Os05g01310
Os.13567.1.S1_at--897--4411Chr05:176463..176487 (25 bp)
GCCAGACTGGGCGAAAGCTTGCTAC
LOC_Os05g01310
Os.13567.1.S1_at--408--3631Chr05:176446..176470 (25 bp)
CTTGCTACAGGGAAGGCGCGGCACT
LOC_Os05g01310
Os.13567.1.S1_at--712--5411Chr05:176303..176327 (25 bp)
GAAGCCGCGAATGCCTTCTATGAGG
LOC_Os05g01310
Os.13567.1.S1_at--105--2571Chr05:176258..176282 (25 bp)
AACGGCGAGCTTGTGAGCGCGTTCA
LOC_Os05g01310
Os.13567.1.S1_at--384--8211Chr05:175960..175984 (25 bp)
GGAATCACTGAATCTGTACCACTAG
LOC_Os05g01310
Os.13567.1.S1_at--839--4751Chr05:175899..175923 (25 bp)
GCTGAAATCTGAACACCTCTTTTGA
LOC_Os05g01310
Os.13567.1.S1_at--186--10751Chr05:175832..175856 (25 bp)
TTGAATTCTGTTTGTGTCGTGGCTG
LOC_Os05g01310
Os.13567.1.S1_at--109--8491Chr05:175813..175837 (25 bp)
TGGCTGGTTCTAGATTCGAGTGGCT
LOC_Os05g01310
Os.13567.1.S1_at--183--8311Chr05:175792..175816 (25 bp)
GGCTAAACTGTACCCATGTTCTTCA
LOC_Os05g01310
Target Sequence 
GAGTTAAATCCAAACGACGCCACGTTGCATTCAAACAGAAGCCTTTGCTGGCTACGGGCAGGGCAAGCTGAACGTGCTCT
GGAGGATGCAAGAGCATGTCGAGCGCTGAGGCCAGACTGGGCGAAAGCTTGCTACAGGGAAGGCGCGGCACTGCGCCTGC
TGCAGAGGTTCGAAGAAGCCGCGAATGCCTTCTATGAGGGGGTGCAGCTTGAGCCAGAGAACGGCGAGCTTGTGAGCGCG
TTCAGGGAGGCGGTTGAAGCCGGGAGGAAATTCCATGGGACGGACAAGAAGCAAAAGGCAGATGCATCAACGTGATGTGT
TTTTGGAATGGCTTAGACCTATACAAGGAGGAATCACTGAATCTGTACCACTAGATTAGTATTAGTTTGGCTTGGCCAAG
AAACGGAGCAGCTGAAATCTGAACACCTCTTTTGATGTTGCTACAAATTTATTATATTAGTATCAATTACTATCAGATTG
AATTCTGTTTGTGTCGTGGCTGGTTCTAGATTCGAGTGGCTAAACTGTACCCATGTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis