Browse Element(s) Details


Os.13646.1.S1_at

Description gb:AK064599.1
DB_XREF= gi:32974617
TID=Os.13646.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-H04, full insert sequence.
FL= gb:AK064599.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g325701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32530OsAffx.31271.1.S1_at10/1111+18696086..18699078hypothetical protein
LOC_Os11g32530OsAffx.17134.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32530Os.21854.1.S1_at1/1111+18696086..18699078hypothetical protein
LOC_Os11g32540OsAffx.7276.1.S1_at11/1111+18706191..18706931Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32550OsAffx.19125.1.S1_at11/1111+18709736..18710336hypothetical protein
LOC_Os11g32560Os.46444.1.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32560OsAffx.18868.5.S1_x_at1/1111+18713542..18715781hypothetical protein
LOC_Os11g32570Os.13646.1.S1_at1/1111+18716409..18718043hypothetical protein
LOC_Os11g32580NANA11+18725456..18726920Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os11g32590OsAffx.31309.1.S1_at6/1111+18729051..18730835transposon protein, putative, Mariner sub-class
LOC_Os11g32600OsAffx.31273.1.S1_x_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32600OsAffx.31273.1.S1_at11/1111+18730955..18731461hypothetical protein
LOC_Os11g32610NANA11+18734918..18736852Chalcone and stilbene synthases, N-terminal domain containing protein
LOC_Os11g32620OsAffx.31274.1.S1_at6/1111+18741746..18743334Chalcone and stilbene synthases, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13646.1.S1_at--875--2271Chr09:3493533..3493557 (25 bp)
AAATGCGTCGGAGAGTTCCTTGGTC
NONE
Os.13646.1.S1_at--251--6691Chr09:3493519..3493543 (25 bp)
GTTCCTTGGTCTTGGAGCAAAACGT
NONE
Os.13646.1.S1_at--372--1892Chr09:3493825..3493845 (21 bp)
ACGTAATACGACTGAGACTTTTGGA
NONE
Os.13646.1.S1_at--291--7391Chr09:3493455..3493479 (25 bp)
GTGAGACCAATGTTTACTTGAACTT
NONE
Os.13646.1.S1_at--694--10211Chr09:3493365..3493389 (25 bp)
TATTATTGCTACATGCGTTCTCCAT
NONE
Os.13646.1.S1_at--308--2111Chr09:3493355..3493379 (25 bp)
ACATGCGTTCTCCATGTGTAGGGAA
NONE
Os.13646.1.S1_at--795--8671Chr09:3493341..3493365 (25 bp)
TGTGTAGGGAACAAACCCCATTGGT
NONE
Os.13646.1.S1_at--396--6751Chr09:3493209..3493233 (25 bp)
GTTCACCTATTATCCTACACTACAA
NONE
Os.13646.1.S1_at--1109--3676Chr06:15620638..15620658 (21 bp)
CTGGGCTTCTGTGACGATTACCTAA
NONE
Os.13646.1.S1_at--515--6216Chr10:4729492..4729515 (24 bp)
GAGGCTGTTTATGACGACTGTTCAT
NONE
Os.13646.1.S1_at--752--6891Chr09:3493047..3493071 (25 bp)
GTATACTTTGCATGGGCTCTGTGAA
NONE
Target Sequence 
AAATGCGTCGGAGAGTTCCTTGGTCTTGGAGCAAAACGTAATACGACTGAGACTTTTGGAAGGAGGGAGTATATATGAGT
GAGACCAATGTTTACTTGAACTTTATCTTATTTAGTCTTCTTTACATTGAGAACATCAACATAATGAAGGTTTGTATTTA
TGTGTCTTTATTATTGCTACATGCGTTCTCCATGTGTAGGGAACAAACCCCATTGGTTTTTCTCTAATTATGCATATATT
TGTCTCCATTATATATTCCATTATATGCATATATTTGGGGGAGCATATCTTATACATATATCGTGCATGTTCTAGATCCA
TGTTGTTCACCTATTATCCTACACTACAACAAATCTGGGCTTCTGTGACGATTACCTAATGACAGAACACATATATGTCA
TAAACAGAGAGGCTGTTTATGACGACTGTTCATAGGATGATAACTGTTTATGACCAAACTGTGTATTTGTCATAATCATC
ATCATAGTATACTTTGCATGGGCTCTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis