Browse Element(s) Details


Os.14.1.S1_x_at

Description gb:AK119710.1
DB_XREF= gi:37989333
TID=Os.14.1
CNT=322
FEA=FLmRNA
TIER=FL+Stack
STK=49
UG=Os.14 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013021C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E11, full insert sequence.
FL= gb:AK119710.1 gb:AK065431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4776011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14.1.S1_x_at--812--8551Chr11:28249862..28249886 (25 bp)
TGGAGTCCAAGAACGCGCTGGAGAA
LOC_Os11g47760
Os.14.1.S1_x_at--269--2811Chr11:28249924..28249948 (25 bp)
AAGATCGCCTCGAAGCTCCCGGCAG
LOC_Os11g47760
Os.14.1.S1_x_at--67--5411Chr11:28249935..28249959 (25 bp)
GAAGCTCCCGGCAGCGGACAAGAAG
LOC_Os11g47760
Os.14.1.S1_x_at--489--991Chr11:28249967..28249991 (25 bp)
AGGATGCCATCGACCAGGCCATCCA
LOC_Os11g47760
Os.14.1.S1_x_at--571--591Chr11:28249970..28249994 (25 bp)
ATGCCATCGACCAGGCCATCCAGTG
LOC_Os11g47760
Os.14.1.S1_x_at--1062--5151Chr11:28250003..28250027 (25 bp)
GCAACCAGCTCGCTGAGGCTGATGA
LOC_Os11g47760
Os.14.1.S1_x_at--310--2651Chr11:28250005..28250029 (25 bp)
AACCAGCTCGCTGAGGCTGATGAGT
LOC_Os11g47760
Os.14.1.S1_x_at--29--871Chr11:28250018..28250042 (25 bp)
AGGCTGATGAGTTCGATGACAAGAT
LOC_Os11g47760
Os.14.1.S1_x_at--14--6191Chr11:28250125..28250149 (25 bp)
GAGGACGATGCTCCCCCGGCTGGCG
LOC_Os11g47760
Os.14.1.S1_x_at--240--71Chr11:28250227..28250251 (25 bp)
ATTGCATTATTAGTGTCTCTTTTAT
LOC_Os11g47760
Os.14.1.S1_x_at--858--10111Chr11:28250282..28250306 (25 bp)
TATGATGATACCCTTGGTCTGTTTG
LOC_Os11g47760
Target Sequence 
TGGAGTCCAAGAACGCGCTGGAGAACTACGCCTACAACATGCGCAACACCATCAAGGATGAGAAGATCGCCTCGAAGCTC
CCGGCAGCGGACAAGAAGAAGATCGAGGATGCCATCGACCAGGCCATCCAGTGGCTGGACGGCAACCAGCTCGCTGAGGC
TGATGAGTTCGATGACAAGATGAAGGAGCTGGAGGGCATCTGCAACCCCATCATCGCCAAGATGTACCAGGGCGCTGGCG
CGGACATGGCCGGCGGCATGGACGAGGACGATGCTCCCCCGGCTGGCGGCAGCGGTGCTGGCCCCAAGATCGAGGAGGTC
GACTAAGCGCGAAATTTGCTAGTGATCCGCGCTTCAAGTTATCTTATTGCATTATTAGTGTCTCTTTTATGTTGTGTTAA
AAAACTTTGCTGCTATGACNTATGATGATACCCTTGGTCTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis