Browse Element(s) Details


Os.1408.1.S1_at

Description gb:AK102840.1
DB_XREF= gi:32988049
TID=Os.1408.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109M13, full insert sequence.
FL= gb:AK102840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1086011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10820Os.1404.1.S1_at10/111+5766864..576907460S ribosomal protein L11, putative, expressed
LOC_Os01g10830Os.22640.1.A1_at11/111+5770102..5770992enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g10840Os.18766.1.S1_s_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.18766.1.S1_x_at11/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.48021.1.S1_x_at2/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10840Os.52172.2.S1_x_at1/111+5771093..5775268Shaggy-related protein kinase iota, putative, expressed
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1408.1.S1_at--9--2351Chr01:5792041..5792065 (25 bp)
AAAGCAGCTCGGGTGGTTCCAAATT
LOC_Os01g10860
Os.1408.1.S1_at--680--3131Chr01:5792020..5792044 (25 bp)
AATTATCACGGTTTCATTGCTGGGA
LOC_Os01g10860
Os.1408.1.S1_at--565--9631Chr01:5791984..5792008 (25 bp)
TCAGTGCCATTCAGAGGTTTCCCGT
LOC_Os01g10860
Os.1408.1.S1_at--514--1031Chr01:5791906..5791930 (25 bp)
AGGTCCCTGCTGATTGTTCCATTGA
LOC_Os01g10860
Os.1408.1.S1_at--117--6351Chr01:5791855..5791879 (25 bp)
GATGCTCATGAAACCTAGTCTTGCC
LOC_Os01g10860
Os.1408.1.S1_at--877--8771Chr01:5791827..5791851 (25 bp)
TGTTTTGCACTGTAGTTTCGGCCAC
LOC_Os01g10860
Os.1408.1.S1_at--731--9451Chr01:5791810..5791834 (25 bp)
TCGGCCACTTCATCTACTGATTGAT
LOC_Os01g10860
Os.1408.1.S1_at--293--311Chr01:5791787..5791811 (25 bp)
ATAGCCGTAGTTTCTGATCGTTGTC
LOC_Os01g10860
Os.1408.1.S1_at--385--2391Chr01:5791692..5791716 (25 bp)
AAACTTGGTGTTCTGTGTCCCTTTG
LOC_Os01g10860
Os.1408.1.S1_at--913--7551Chr01:5791657..5791681 (25 bp)
GGGCGCGTTAACTTTGGTATCCAGC
LOC_Os01g10860
Os.1408.1.S1_at--174--1591Chr01:5791635..5791659 (25 bp)
AGCTCTGCTGTACTTTCTTATGCAT
LOC_Os01g10860
Target Sequence 
AAAGCAGCTCGGGTGGTTCCAAATTATCACGGTTTCATTGCTGGGATTAGTTACATATCAGTGCCATTCAGAGGTTTCCC
GTCTCGACAAGGAAGTCGCTGCTCCAAAGAGCGAGAGCACGTAGACTCAAGAGCAAGGTCCCTGCTGATTGTTCCATTGA
TGATTAAGAAGAAGACGATCTCGCTTGATGCTCATGAAACCTAGTCTTGCCAAGTGTTTTGCACTGTAGTTTCGGCCACT
TCATCTACTGATTGATAGCCGTAGTTTCTGATCGTTGTCAGTGTAGTTTGCTGGTGCTGCGCTGCATGTTTCCATTTTGA
TTCGTAACCTGNTTAAACCCTCAATGCCCAAACTTGGTGTTCTGTGTCCCTTTGCTTGATGCGTGGGCGCGTTAACTTTG
GTATCCAGCTCTGCTGTACTTTCTTATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis