Browse Element(s) Details


Os.14081.1.S1_at

Description gb:AK121765.1
DB_XREF= gi:37991388
TID=Os.14081.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.14081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091O16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091O16, full insert sequence.
FL= gb:AK121765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4596011/11aldehyde dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45920OsAffx.15118.1.S1_at8/115+26525016..26529165S1 RNA binding domain containing protein, expressed
LOC_Os05g45930Os.4979.1.S1_at11/115+26533272..26537588IQ calmodulin-binding motif family protein, expressed
LOC_Os05g45940OsAffx.27334.1.S1_at11/115+26541060..26541486hypothetical protein
LOC_Os05g45950Os.4771.1.S1_at11/115+26544902..26548295Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os05g45960Os.14081.1.S1_at11/115+26551605..26557592aldehyde dehydrogenase, putative, expressed
LOC_Os05g45970Os.35344.3.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970Os.35344.18.S1_x_at8/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_at7/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45970OsAffx.22940.5.S1_x_at5/115+26557854..26564794transposon protein, putative, Mutator sub-class
LOC_Os05g45980OsAffx.15119.1.S1_at11/115+26568273..26571379hypothetical protein
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010133biological_processproline catabolism to glutamate
GO:0005739cellular_componentmitochondrion
GO:0003842molecular_function1-pyrroline-5-carboxylate dehydrogenase activity
GO:0004028molecular_function3-chloroallyl aldehyde dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14081.1.S1_at--1106--10191Chr05:26552345..26552636 (25 bp)
TTGGTCCTTTCCAGGTGGTTACAGA
LOC_Os05g45960
Os.14081.1.S1_at--689--1671Chr05:26552290..26552311 (22 bp)
AGCCTGTGAAAGGATGAACGCTCAT
LOC_Os05g45960
Os.14081.1.S1_at--271--8951Chr05:26552262..26552286 (25 bp)
TGACGGCTGCAGTTGTTTCAAACGA
LOC_Os05g45960
Os.14081.1.S1_at--433--8771Chr05:26552249..26552273 (25 bp)
TGTTTCAAACGACCCTTTATTCCTG
LOC_Os05g45960
Os.14081.1.S1_at--87--1871Chr05:26552240..26552265 (25 bp)
ACGACCCTTTATTCCTGCAGGAAGT
LOC_Os05g45960
Os.14081.1.S1_at--159--9831Chr05:26551795..26551819 (25 bp)
TAAACTCGTTTGGTCTTGCCACAGG
LOC_Os05g45960
Os.14081.1.S1_at--1050--7811Chr05:26551784..26551808 (25 bp)
GGTCTTGCCACAGGGAGATCATATA
LOC_Os05g45960
Os.14081.1.S1_at--317--2031Chr05:26551729..26551753 (25 bp)
ACTACCTTCCGCTACATAAATACTA
LOC_Os05g45960
Os.14081.1.S1_at--834--91Chr05:26551674..26551698 (25 bp)
ATTCTGAATAATTTGCCCCGTCTGG
LOC_Os05g45960
Os.14081.1.S1_at--242--4251Chr05:26551657..26551681 (25 bp)
CCGTCTGGGCAATCATGTGTTTCAT
LOC_Os05g45960
Os.14081.1.S1_at--323--7431Chr05:26551641..26551665 (25 bp)
GTGTTTCATTAACCCCGAGAGCATA
LOC_Os05g45960
Target Sequence 
TTGGTCCTTTCCAGGTGGTTACAGAGTATTCTGATGATGAGCTTGAATTAGTATTAGAAGCCTGTGAAAGGATGAACGCT
CATNTGACGGCTGCAGTTGTTTCAAACGACCCTTTATTCCTGCAGGAAGTACTTGGGCGATCAGTTAACGGGACAACATA
TGCCGGCATCCGAGCAAGGACAACTGGTGCTCCACAGAACCACNTGGTTTGGGCCTGCTGGTGATCCANAGAGGTGCAGG
GATCGGAACTCCAGAAGCCATTAAACTCGTTTGGTCTTGCCACAGGGAGATCATATATGACATTGGCCCCTTGCCTAAGA
ACNGGGCACTACCTTCCGCTACATAAATACTATGTCAAGGCTAGATTAGCTTGTAGCNTGTTATTCTGAATAATTTGCCC
CGTCTGGGCAATCATGTGTTTCATTAACCCCGAGAGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis