Browse Element(s) Details


Os.14096.1.S1_at

Description gb:NM_192858.1
DB_XREF= gi:34912799
GEN=P0501G01.9
TID=Os.14096.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.14096 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0501G01.9 (P0501G01.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0501G01.9 (P0501G01.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g434008/11expressed protein
LOC_Os06g010601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43370Os.9195.1.S1_at11/111+25135378..25140247expressed protein
LOC_Os01g43380OsAffx.2225.1.S1_at11/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43380Os.41226.1.S1_at6/111+25140513..25147244glycosyltransferase family protein 1, putative, expressed
LOC_Os01g43390Os.32068.1.S1_at11/111+25150846..25154987Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os01g43400Os.14096.1.S1_at8/111+25159888..25160988expressed protein
LOC_Os01g43410Os.27820.1.S1_at11/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32230.1.A1_x_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43410OsAffx.32301.1.A1_at1/111+25166037..25170326Calcium-dependent protein kinase, putative, expressed
LOC_Os01g43420Os.6537.1.S1_at11/111+25170580..25173763expressed protein
LOC_Os01g43430Os.51609.1.S1_at10/111+25177291..25178063expressed protein
LOC_Os01g43440OsAffx.23646.1.S1_at11/111+25182785..25184269Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14096.1.S1_at--555--6331Chr01:25161042..25161066 (25 bp)
GATGCTGGTGGTAAAATCCCTTGGC
NONE
Os.14096.1.S1_at--734--2431Chr01:25161030..25161054 (25 bp)
AAAATCCCTTGGCTTGCCATCGTGT
NONE
Os.14096.1.S1_at--1000--491Chr01:25161012..25161036 (25 bp)
ATCGTGTCCAACATCAGAGCTGCTC
NONE
Os.14096.1.S1_at--60--8551Chr01:25160963..25160987 (25 bp)
TGGAGCCCTCCTCTGGATTATGGGA
LOC_Os01g43400
Os.14096.1.S1_at--954--4611Chr01:25160878..25160902 (25 bp)
GCGAGGCGGCTCGTGATTGTCTAAA
LOC_Os01g43400
Os.14096.1.S1_at--252--10871Chr01:25160818..25160842 (25 bp)
TTGGAGAACACCGTGCCGACGCCAT
LOC_Os01g43400
Os.14096.1.S1_at--474--4433Chr03:17697390..17697414 (25 bp)
GCCATCTTCTCGCAAGCTCGAGGCG
NONE
Os.14096.1.S1_at--229--7151Chr01:25160753..25160777 (25 bp)
GTCTACACCACCACGGTGGCTGTCA
LOC_Os01g43400
Os.14096.1.S1_at--239--4791Chr01:25160366..25160743 (25 bp)
GCTCCACCATCGTCGGGCGAGGATT
LOC_Os01g43400
Os.14096.1.S1_at--910--932Chr06:40694..40717 (24 bp)
AGGAAAGCAATGATTCTAGGGTTTT
LOC_Os06g01060
Os.14096.1.S1_at--756--7231Chr01:25160018..25160042 (25 bp)
GTCGCTGCGACGAATCGAACGGCTG
LOC_Os01g43400
Target Sequence 
GATGCTGGTGGTAAAATCCCTTGGCTTGCCATCGTGTCCAACATCAGAGCTGCTCCGGATCAAGCGCTGCACCACCATAT
GGAGCCCTCCTCTGGATTATGGGAGGCGGCACCAGATGAAGCAGCGAGGGGAGGACGGAGGATGCAGCGGCGGCGGTAGG
CGATGCGAGGCGGCTCGTGATTGTCTAAAGCAGGCGAGAGAAAGGCGCGANGGGGGACCCCCACCTTGGAGAACACCGTG
CCGACGCCATCTTCTCGCAAGCTCGAGGCGTCCGCCTCCTGGGCCAATCAGTCTACACCACCACGGTGGCTGTCATCCGC
TTCAGCTCCACCATCGTCGGGCGAGGATTGGTGCTGGAGAATGAAGCGGCGGCGCGGGGCGTCAATGGGGCGGAGAGGGG
AAGGAAAGCAATGATTCTAGGGTTTTGGGGGAAGGGGTATAGCCGTCGCTGCGACGAATCGAACGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis