Browse Element(s) Details


Os.14100.1.S1_at

Description gb:BI804947
DB_XREF= gi:15852151
DB_XREF=S002E12
CLONE=S002E12
TID=Os.14100.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.14100 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6555011/11RNA recognition motif family protein, expressed
LOC_Os08g451801/11pfkB-type carbohydrate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14100.1.S1_at--433--7291Chr01:38380815..38380839 (25 bp)
GTGCCCCTTGTCAGAGACAGGTTCA
LOC_Os01g65550
Os.14100.1.S1_at--629--10351Chr01:38380858..38380882 (25 bp)
TTTTTGGCACTTAGTGCTACCTCCT
LOC_Os01g65550
Os.14100.1.S1_at--668--3711Chr01:38380874..38380898 (25 bp)
CTACCTCCTGTCATTTCTAACATAG
LOC_Os01g65550
Os.14100.1.S1_at--103--8531Chr01:38380922..38380946 (25 bp)
TGGAAATGCCAGACACTGCCTATGT
LOC_Os01g65550
Os.14100.1.S1_at--567--5631Chr01:38380933..38380957 (25 bp)
GACACTGCCTATGTATTTCATTCAT
LOC_Os01g65550
Os.14100.1.S1_at--675--10531Chr01:38380953..38380977 (25 bp)
TTCATTAACCCCAATGGACCCATAG
LOC_Os01g65550
Os.14100.1.S1_at--961--171Chr01:38380982..38381006 (25 bp)
ATTTTATTGTCTTGGGTCGGCCACT
LOC_Os01g65550
Os.14100.1.S1_at--461--10851Chr01:38380993..38381017 (25 bp)
TTGGGTCGGCCACTCATCTAGATGT
LOC_Os01g65550
Os.14100.1.S1_at--184--451Chr01:38381008..38381032 (25 bp)
ATCTAGATGTCCATTGCTTCCCCAA
LOC_Os01g65550
Os.14100.1.S1_at--667--10652Chr08:28240308..28240373 (24 bp)
TTCCCCAATGTCACTACCATGGTTA
LOC_Os08g45180
Os.14100.1.S1_at--141--1731Chr01:38381040..38381064 (25 bp)
ACCATGGTTAGGTCCAGGATCACTC
LOC_Os01g65550
Target Sequence 
GTGCCCCTTGTCAGAGACAGGTTCAGAGGAGTGCTAATGTTTGTTTTTGGCACTTAGTGCTACCTCCTGTCATTTCTAAC
ATAGTGATGGTACCCCAAAGAAGGCTTTGGAAATGCCAGACACTGCCTATGTATTTCATTCATTAACCCCAATGGACCCA
TAGATATATTTTATTGTCTTGGGTCGGCCACTCATCTAGATGTCCATTGCTTCCCCAATGTCACTACCATGGTTAGGTCC
AGGATCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis