Browse Element(s) Details


Os.14111.1.S1_s_at

Description gb:AK067739.1
DB_XREF= gi:32977757
TID=Os.14111.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120L17, full insert sequence.
FL= gb:AK067739.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7403011/11BPM, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73970Os.10616.2.S1_x_at11/111+43175076..43179858expressed protein
LOC_Os01g73970Os.10616.1.S1_a_at11/111+43175076..43179858expressed protein
LOC_Os01g73980Os.9015.1.S1_at11/111+43182505..43184314Caricain precursor, putative, expressed
LOC_Os01g73990Os.45964.1.S1_at11/111+43185629..43187346Cytochrome b5, putative, expressed
LOC_Os01g74000Os.24891.2.S1_x_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.2.S1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74000Os.24891.1.A1_at11/111+43187671..43193462Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os01g74010Os.14644.1.S1_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74010Os.14644.1.S1_a_at11/111+43197372..43199534Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os01g74020Os.49746.1.S1_at11/111+43201121..43202363myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g74030Os.14111.1.S1_s_at11/111+43203415..43209812BPM, putative, expressed
LOC_Os01g74040Os.38236.1.S1_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74040Os.38236.2.S1_x_at11/111+43211801..43213078Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74050NANA1+43216293..43217258transposon protein, putative, unclassified
LOC_Os01g74060NANA1+43218989..43219558transposon protein, putative, unclassified
LOC_Os01g74070NANA1+43220068..43222830transposon protein, putative, unclassified
LOC_Os01g74080NANA1+43223611..43226771retrotransposon protein, putative, unclassified
LOC_Os01g74090NANA1+43227677..43228867transposon protein, putative, unclassified
LOC_Os01g74100NANA1+43231233..43231949hypothetical protein
LOC_Os01g74110Os.6649.1.S1_at11/111+43232418..43234310Zinc transporter 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14111.1.S1_s_at--946--5511Chr01:43203969..43203993 (25 bp)
GAAAAGCGGCTTGGGCTTCAACCAT
LOC_Os01g74030
Os.14111.1.S1_s_at--785--1091Chr01:43203899..43203923 (25 bp)
AGTGGCTAGGTTTGCACTGGCGTCA
LOC_Os01g74030
Os.14111.1.S1_s_at--559--1952Chr06:27633019..27633353 (25 bp)
ACTGGCGTCATGTTTTTCTATCTAA
NONE
Os.14111.1.S1_s_at--996--2611Chr01:43203856..43203880 (25 bp)
AACCCCTACTAGTACGAGGCTCTGT
LOC_Os01g74030
Os.14111.1.S1_s_at--481--4811Chr01:43203838..43203862 (25 bp)
GCTCTGTTCTGAATGGCCTTGTTAG
LOC_Os01g74030
Os.14111.1.S1_s_at--110--1351Chr01:43203801..43203825 (25 bp)
AGAGTAGTAGCTTGCACCGGAGAGT
LOC_Os01g74030
Os.14111.1.S1_s_at--442--1431Chr01:43203731..43203755 (25 bp)
AGAATCTTCATGTGTACCGTGTACT
LOC_Os01g74030
Os.14111.1.S1_s_at--1159--2411Chr01:43203566..43203590 (25 bp)
AAAAGAATTAATCTCAGCCCTGCCC
LOC_Os01g74030
Os.14111.1.S1_s_at--332--6511Chr01:43203527..43203551 (25 bp)
GATATCATATCAGGGCGTCGCGTTT
LOC_Os01g74030
Os.14111.1.S1_s_at--388--1971Chr01:43203480..43203504 (25 bp)
ACTGTACCACAGATGATGCCTTGAG
LOC_Os01g74030
Os.14111.1.S1_s_at--721--9191Chr01:43203464..43203488 (25 bp)
TGCCTTGAGCTGTTCTGTGGGTGAA
LOC_Os01g74030
Target Sequence 
GAAAAGCGGCTTGGGCTTCAACCATCAACTGCAGCTTGAAGAATAAGCGCTATCTAGTTGTACAGCTAACAGTGGCTAGG
TTTGCACTGGCGTCATGTTTTTCTATCTAAACCAACCCCTACTAGTACGAGGCTCTGTTCTGAATGGCCTTGTTAGAAAT
AAAGANGAGAGAGTAGTAGCTTGCACCGGAGAGTGTACATTCTGTAGCTGAGGAACTAGCACNAGGGAGGGAGATAAAAA
GAATCTTCATGTGTACCGTGTACTATGAGTTCTCAAACTGTGTAAAAAGAGGAGGAGCNAGGTGTACAANTTTTTTAGAA
CTAGAGCGAAAGAGAGGGCTGTTGTTAGCTGTTTTATTAAACTTTTAAAAAGNCCAGTCACTAGTACTTTTTTCTTTTTG
AAAAAAAAAGAATTAATCTCAGCCCTGCCCGGTATCGATGATTCGATATCATATCAGGGCGTCGCGTTTTGTTGTAACAT
ATACTACTACTACTGTACCACAGATGATGCCTTGAGCTGTTCTGTGGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14111.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis