Browse Element(s) Details


Os.14214.1.S1_at

Description gb:AK066409.1
DB_XREF= gi:32976427
TID=Os.14214.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-036-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067G18, full insert sequence.
FL= gb:AK066409.1 gb:AK104685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0290011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein
LOC_Os06g02840OsAffx.27430.1.S1_at11/116+1043888..1044487Harpin-induced protein 1 containing protein
LOC_Os06g02850Os.52461.1.S1_at11/116+1045030..1047727expressed protein
LOC_Os06g02850OsAffx.14477.1.S1_at1/116+1045030..1047727expressed protein
LOC_Os06g02860NANA6+1050966..1051606hypothetical protein
LOC_Os06g02870OsAffx.15237.1.S1_at11/116+1052171..1055079hypothetical protein
LOC_Os06g02880OsAffx.29663.1.S1_at8/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.380.1.S1_at4/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880Os.27345.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.13325.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02910NANA6+1070114..1070593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02920NANA6+1073319..1074518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02930OsAffx.15239.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02930Os.7163.1.S1_at11/116+1077073..1078054expressed protein
LOC_Os06g02940Os.20086.1.S1_at11/116+1078930..1079932expressed protein
LOC_Os06g02949NANA6+1087381..1088185NA
LOC_Os06g02960Os.52298.1.S1_at11/116+1089059..1091611expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14214.1.S1_at--1135--3971Chr06:1063014..1063038 (25 bp)
CGGGATCCTGTTAGGCAGCTGCCTC
LOC_Os06g02900
Os.14214.1.S1_at--340--3211Chr06:1062900..1062924 (25 bp)
CAAGGCCATGCGATTCAGGACCGCC
LOC_Os06g02900
Os.14214.1.S1_at--563--4471Chr06:1062875..1062899 (25 bp)
GCCTGCTAAGTGCTAATTCAAATTT
LOC_Os06g02900
Os.14214.1.S1_at--68--4931Chr06:1062846..1062870 (25 bp)
GCTTGCCAAACTAGCGTATTGTTAG
LOC_Os06g02900
Os.14214.1.S1_at--154--6812Chr06:1062758..1062782 (25 bp)
GTTTTGATGCCATGTTTATCCTACA
LOC_Os06g02900
Os.14214.1.S1_at--31--731Chr06:1062747..1062771 (25 bp)
ATGTTTATCCTACATGGCGTACTAG
LOC_Os06g02900
Os.14214.1.S1_at--1130--6951Chr06:1062690..1062714 (25 bp)
GTAGCTAGCTTAATTGCAGCATTGT
LOC_Os06g02900
Os.14214.1.S1_at--937--911Chr06:1062653..1062677 (25 bp)
AGGCTAGCTACTAAAGCTCTTTTAT
LOC_Os06g02900
Os.14214.1.S1_at--275--9591Chr06:1062603..1062627 (25 bp)
TCTTGATGTGATTTCGGTCGTGTGA
LOC_Os06g02900
Os.14214.1.S1_at--64--531Chr06:1062569..1062593 (25 bp)
ATCGAGTTATGCATCTCCATCTTGC
LOC_Os06g02900
Os.14214.1.S1_at--1110--631Chr06:1062561..1062585 (25 bp)
ATGCATCTCCATCTTGCATGTCAAG
LOC_Os06g02900
Target Sequence 
CGGGATCCTGTTAGGCAGCTGCCTCGCCTTCGCGCCCACAGCCAGCGACCGCATGCCCGGCTTCATCGGCAACGTGCAGC
AGAAGACGCTGGAGGTGGTGTACGACGTTCCCGCCAAGGCCATGCGATTCAGGACCGCCNGCCTGCTAAGTGCTAATTCA
AATTTGCTTGCTTGCCAAACTAGCGTATTGTTAGCTTATTATTCGAATATAAGCTAGCTAGTTGATGAAATAATTAGTCA
AAGTGATTGTTGTTTATGTTTTGATGCCATGTTTATCCTACATGGCGTACTAGTAGAGCATCTATCTCTATGGAAAGGGA
TTAAAGTAGCTAGCTTAATTGCAGCATTGTCTGCTAAAGTTTAGGCTAGCTACTAAAGCTCTTTTATTTATCTTGTCTGC
AATAATTTGTTATCTTGATGTGATTTCGGTCGTGTGAGATTGTAATATCGAGTTATGCATCTCCATCTTGCATGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis